PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180665.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 484aa MW: 53578.9 Da PI: 6.3219

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8e-07	254	275	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_019180665.1 254 FCTICGKGFKRDANLRMHMRGH 275 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MDPDNGLDSD PWTKSSLSCN DFLENVPPDD QSFNVFTLQQ QKWESSFLNQ LNQPSQNQSS 60 VSTINNIQIR VPDQQDTQAC DSNKIQEWDP KTMLNNLSFL EKKIHELQDM VHVIVGRRGQ 120 VGFQANELLV QQQQLITADL TSIIVQLIST AGSLLPTVKH TLSYSGQGGQ LVQPGGVATP 180 PGAGFNSGGV TQSVNNVSKV EDQSIHIDPV GDSGVEEHEL KDEDEAEEEE NLPPGSYEIL 240 QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK EVSSVPALIK 300 RYSCPYVGCK RNREHKKFQP LKTILCVKNH YKRTHCEKSY TCSRCNVKKF SVIADLKTHE 360 KHCGKDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD HKGSSSGLSD PKLNNACSGS 420 PQNAIDVKDP GSYFSPMNYD TGDLGGFQDF PRVPFEDSNS SFSFLLSGSC DYPQKAGKYG 480 SSSE

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MDPDNGLDSD PWTKSSLSCN DFLENVPPDD QSFNVFTLQQ QKWESSFLNQ LNQPSQNQSS  60
VSTINNIQIR VPDQQDTQAC DSNKIQEWDP KTMLNNLSFL EKKIHELQDM VHVIVGRRGQ  120
VGFQANELLV QQQQLITADL TSIIVQLIST AGSLLPTVKH TLSYSGQGGQ LVQPGGVATP  180
PGAGFNSGGV TQSVNNVSKV EDQSIHIDPV GDSGVEEHEL KDEDEAEEEE NLPPGSYEIL  240
QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK EVSSVPALIK  300
RYSCPYVGCK RNREHKKFQP LKTILCVKNH YKRTHCEKSY TCSRCNVKKF SVIADLKTHE  360
KHCGKDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD HKGSSSGLSD PKLNNACSGS  420
PQNAIDVKDP GSYFSPMNYD TGDLGGFQDF PRVPFEDSNS SFSFLLSGSC DYPQKAGKYG  480
SSSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-164	C2H2 family protein