PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180614.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29053.9 Da    PI: 9.0531
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.9e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+ KKA+E+SvLCdaev +i+fs++gkl+eys+
  XP_019180614.1  9 KRIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVGLIVFSHKGKLFEYST 59
                    79***********************************************96 PP
2K-box100.52.4e-33831749100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++ +e+++ e+akLk+++e L+r+++h++GedL++Lslk+Lq+LeqqL++slk iRs++n+ll+e+++elqkke++++een++L kk++e
  XP_019180614.1  83 NNSESSENWTLEYAKLKAKVELLKRNHKHYMGEDLDTLSLKDLQNLEQQLDSSLKLIRSRRNQLLYESLSELQKKERAIREENNMLAKKIKE 174
                     567779***********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGKVELKR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVGLIVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERRL LANNSESSEN WTLEYAKLKA KVELLKRNHK HYMGEDLDTL  120
SLKDLQNLEQ QLDSSLKLIR SRRNQLLYES LSELQKKERA IREENNMLAK KIKEKEKSAA  180
AAAAAQPQAP WEQQNHQVPP GSSSFLFQQP SLPGLNIGGS YQGGEAADEA RRNNNDLDLN  240
LDSLYPPCHL GCFAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.15e-87MIKC_MADS family protein