PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180489.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 393aa MW: 43146.2 Da PI: 8.7346

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.3	5.9e-40	129	206	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yh++h+vCe+hsk+p+v+v g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr +++ XP_019180489.1 129 RCQVEGCNLDLSSAKQYHKKHRVCEKHSKCPKVIVGGVERRFCQQCSRFHSLSEFDDKKRSCRRRLSDHNARRRNPRQ 206 6*************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEWSARWGCE SLVMLSSKPG ESPKKLQLTD SEIVEDGGEL DGGGSDSGSG VYGSDPGQVH 60 STKGSISLKK SPPRDTLVGS VEPLIGLKLG KRTYFERGNV KSLSSVAPVS SAPMSKRTKS 120 SSRGSQISRC QVEGCNLDLS SAKQYHKKHR VCEKHSKCPK VIVGGVERRF CQQCSRFHSL 180 SEFDDKKRSC RRRLSDHNAR RRNPRQDLIQ FNSTSLPSSF YDDRLQVNFV LNQVPVVHSK 240 TAANSSWDTR SSKFTISEEF ISEPEKTTSI NRQPYISGIQ LPNATGLHSN AWNWALTSKA 300 TNAEDFGQGP PSNVCTMQEF ACALSLLSTP SQSSFEPISV SNGNPAGHAN QSNFPAETML 360 HADTIPQGLP LASSEYSVFN QFPWPYPGWG CQY

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEWSARWGCE SLVMLSSKPG ESPKKLQLTD SEIVEDGGEL DGGGSDSGSG VYGSDPGQVH  60
STKGSISLKK SPPRDTLVGS VEPLIGLKLG KRTYFERGNV KSLSSVAPVS SAPMSKRTKS  120
SSRGSQISRC QVEGCNLDLS SAKQYHKKHR VCEKHSKCPK VIVGGVERRF CQQCSRFHSL  180
SEFDDKKRSC RRRLSDHNAR RRNPRQDLIQ FNSTSLPSSF YDDRLQVNFV LNQVPVVHSK  240
TAANSSWDTR SSKFTISEEF ISEPEKTTSI NRQPYISGIQ LPNATGLHSN AWNWALTSKA  300
TNAEDFGQGP PSNVCTMQEF ACALSLLSTP SQSSFEPISV SNGNPAGHAN QSNFPAETML  360
HADTIPQGLP LASSEYSVFN QFPWPYPGWG CQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-54	SBP family protein