PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180484.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 928aa MW: 103662 Da PI: 5.899

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.8	3.5e-52	15	130	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwlk+ e+++iL+n+e+ ++t+ ++++p+sgsl+L+n++++r+frkDG+ w++kkdg++ E+he+LKvg+ve+l+cyYah+e+np+fq XP_019180484.1 15 VREaKNRWLKPAEVLSILQNHENLQITHVPPEKPPSGSLFLFNKRVLRFFRKDGHRWRRKKDGRAGGEAHERLKVGNVEALNCYYAHGEQNPKFQ 109 55669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+iv+vhy++ XP_019180484.1 110 RRSYWMLDPAYEHIVFVHYRD 130 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence
MLAMTESGFN YDDLVREAKN RWLKPAEVLS ILQNHENLQI THVPPEKPPS GSLFLFNKRV 60 LRFFRKDGHR WRRKKDGRAG GEAHERLKVG NVEALNCYYA HGEQNPKFQR RSYWMLDPAY 120 EHIVFVHYRD ICQGGQKTLS VPQLSPVSST INQNPSPYPV QYTSYTAANG GIFEAYSSPG 180 SMEISSFPVT NSNGTNHSSG TVEEDSSPSA HEISEVLKRI EEELYMNDGI VPLYNTIENS 240 AHVDNIRDDL HNSINQIPED SNCDLLQRRS GDLTEYRDQL LGHEVNLWNM DDGYGSSVDG 300 KNILLARDLV ETPESVSWLN FDGDFRYPTF WPEINTDGSN PDQSHALFDQ DQNGISIAQK 360 QKFRIADLSP NWGYADEATK VIIIGCFLCD PSESEWKCMF GDIEVPVQII QEGVLCCHSP 420 PHLPDKVTLC ITMGNQEPCS EGREFEYRVK STGTAESCLP ETQCTIKNTE ELLLLVRFAK 480 MLLSDGSRCS TDSPESGNKL LEKVKASEEL WGEMIDTLLV GNSTSSLTVD WLLQELLKDK 540 LQQWLSSKLQ GQTNLSDSDC VLSRKEQGVI HMIAGLGFEW ALQPILDAGV TVNFRDINGW 600 TALHWAARFG REKMVAALIA SGASAGAVTD ATKQDPIGQS PADIAALYGH KGLAGYLSEV 660 ALTTHLSSLT LEKSELAKGA AEVEAERTIG GISETGATTN EDQLSLNDTL AAARNAAQAA 720 ARIQAAFRAH SFRKRQQREA EATAAAAFAT GDEYSILLND IQGLSAASKL SFRNSRNYNS 780 AALVIQKKYR GWKGRKDFLA FRRKVVKIQA HVRGYQVRKE YKVCWATGIL EKVVLRWRRR 840 GVGLRGFHLE IDESEGEAIL RVFRKQKVDA AIDEAVSRVL SMVESQEARN QYRRILEKYR 900 QAKAKLQSAE TDAKTSHDSM SNMENDDL

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence

MLAMTESGFN YDDLVREAKN RWLKPAEVLS ILQNHENLQI THVPPEKPPS GSLFLFNKRV  60
LRFFRKDGHR WRRKKDGRAG GEAHERLKVG NVEALNCYYA HGEQNPKFQR RSYWMLDPAY  120
EHIVFVHYRD ICQGGQKTLS VPQLSPVSST INQNPSPYPV QYTSYTAANG GIFEAYSSPG  180
SMEISSFPVT NSNGTNHSSG TVEEDSSPSA HEISEVLKRI EEELYMNDGI VPLYNTIENS  240
AHVDNIRDDL HNSINQIPED SNCDLLQRRS GDLTEYRDQL LGHEVNLWNM DDGYGSSVDG  300
KNILLARDLV ETPESVSWLN FDGDFRYPTF WPEINTDGSN PDQSHALFDQ DQNGISIAQK  360
QKFRIADLSP NWGYADEATK VIIIGCFLCD PSESEWKCMF GDIEVPVQII QEGVLCCHSP  420
PHLPDKVTLC ITMGNQEPCS EGREFEYRVK STGTAESCLP ETQCTIKNTE ELLLLVRFAK  480
MLLSDGSRCS TDSPESGNKL LEKVKASEEL WGEMIDTLLV GNSTSSLTVD WLLQELLKDK  540
LQQWLSSKLQ GQTNLSDSDC VLSRKEQGVI HMIAGLGFEW ALQPILDAGV TVNFRDINGW  600
TALHWAARFG REKMVAALIA SGASAGAVTD ATKQDPIGQS PADIAALYGH KGLAGYLSEV  660
ALTTHLSSLT LEKSELAKGA AEVEAERTIG GISETGATTN EDQLSLNDTL AAARNAAQAA  720
ARIQAAFRAH SFRKRQQREA EATAAAAFAT GDEYSILLND IQGLSAASKL SFRNSRNYNS  780
AALVIQKKYR GWKGRKDFLA FRRKVVKIQA HVRGYQVRKE YKVCWATGIL EKVVLRWRRR  840
GVGLRGFHLE IDESEGEAIL RVFRKQKVDA AIDEAVSRVL SMVESQEARN QYRRILEKYR  900
QAKAKLQSAE TDAKTSHDSM SNMENDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-174	CAMTA family protein