PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180463.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CPP

Protein Properties

Length: 806aa MW: 87970.1 Da PI: 6.4684

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.1	1.1e-15	504	542	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C C++C+Nk XP_019180463.1 504 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCLCQECFNKP 542 689**********************************96 PP
2	TCR	51.1	2.7e-16	589	627	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN XP_019180463.1 589 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 627 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MRVESVVLER ESVESQGRKK EGGGGGEGVM DTPERNKSNQ IATPISKFED SPVFNFLNSL 60 SPIKPVKSVH ITQSFNSLSF ASLPSVFTSP HVSTVKESRF LRRHQLPDPS KPEFSSDNDH 120 RVERPVGNDL DVANDASEKE ESFDPQSCIV DDSVQPSPHE STKISSELVR TLDYECSSPN 180 SSPMPSSGVK NRNLLQFAGS SVTIIPLVQD VSGKGLMGSE VDRNKEASGC EWESLMPDAA 240 DLLIFDSPND AEAFKKAMDS SPRSVPFVAN EIQNMETFST VSYGELVGDG SETQNQSAQP 300 GGGNELHQYS ETQDIIPDSS LNNAMTGGPN EIDAEMVSGL YRGMRRRCLV FEMNGARRQP 360 LDDNSGSSSS ILAEHDGNTA EKHLVAVNES SRRVLPGIGL HLNALAVTPR DGKGAKHESF 420 ASSGKQLIIA PTSAANYHLI TTSQESLNNS LAVVSSEREI VPTRNGASLN EDASQEPRYV 480 GNEELSQTSP KKKKRKVDSK EGESCKRCNC KKSKCLKLYC ECFAAGVYCV EPCLCQECFN 540 KPIHEDMVLA TRKQIESRNP LAFAPKVIRS TDSMSETGDD SNKTPASARH KRGCNCKKSG 600 CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSDPDLED EETDLFEKSV VERSSQKLAI 660 AQNEIEHIPD SALPATPLRL KRPQMQFPFP SKNKPPRSSF LSIGSSSGSQ GLGRPSFFQS 720 LPKFDKQFET IKEDENEMPE VLQTTCRSPI SGIKSGSPNS KRVSPPHHHH HSSEFGTSSS 780 SSPGRRSSRK LILQSIPTFP SLTPNQ

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MRVESVVLER ESVESQGRKK EGGGGGEGVM DTPERNKSNQ IATPISKFED SPVFNFLNSL  60
SPIKPVKSVH ITQSFNSLSF ASLPSVFTSP HVSTVKESRF LRRHQLPDPS KPEFSSDNDH  120
RVERPVGNDL DVANDASEKE ESFDPQSCIV DDSVQPSPHE STKISSELVR TLDYECSSPN  180
SSPMPSSGVK NRNLLQFAGS SVTIIPLVQD VSGKGLMGSE VDRNKEASGC EWESLMPDAA  240
DLLIFDSPND AEAFKKAMDS SPRSVPFVAN EIQNMETFST VSYGELVGDG SETQNQSAQP  300
GGGNELHQYS ETQDIIPDSS LNNAMTGGPN EIDAEMVSGL YRGMRRRCLV FEMNGARRQP  360
LDDNSGSSSS ILAEHDGNTA EKHLVAVNES SRRVLPGIGL HLNALAVTPR DGKGAKHESF  420
ASSGKQLIIA PTSAANYHLI TTSQESLNNS LAVVSSEREI VPTRNGASLN EDASQEPRYV  480
GNEELSQTSP KKKKRKVDSK EGESCKRCNC KKSKCLKLYC ECFAAGVYCV EPCLCQECFN  540
KPIHEDMVLA TRKQIESRNP LAFAPKVIRS TDSMSETGDD SNKTPASARH KRGCNCKKSG  600
CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSDPDLED EETDLFEKSV VERSSQKLAI  660
AQNEIEHIPD SALPATPLRL KRPQMQFPFP SKNKPPRSSF LSIGSSSGSQ GLGRPSFFQS  720
LPKFDKQFET IKEDENEMPE VLQTTCRSPI SGIKSGSPNS KRVSPPHHHH HSSEFGTSSS  780
SSPGRRSSRK LILQSIPTFP SLTPNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	496	PKKKKRK
2	491	496	KKKKRK
3	492	497	KKKRKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-132	CPP family protein