PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019180323.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 457aa    MW: 51141.9 Da    PI: 5.9949
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019180323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.82.8e-84774541374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl +A av++++l+ a a L++l +++s  gd++qR+ ayf+ AL arl+ + s  y+++   +ts    +ee+ a++ +++vsP+++f+h
  XP_019180323.1  77 LINLLLVAAAAVNDNNLTSAMANLSELCQNVSVLGDAIQRVSAYFAAALTARLLTQKSPFYHTIMKPPTS----QEEFLAFTHLYKVSPLYQFAH 167
                     5799*********************************************************999877775....788899999************ PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvl 181
                     +taNqaI ea+e+e    +H+iDfdis+G+QWp+L+q+L++            slRiTg++       +el+et+ rL +fA+ + +++fef+ l
  XP_019180323.1 168 FTANQAIIEAFENEnkPSLHVIDFDISHGFQWPSLIQSLSQNITTtpallnRISLRITGFAT----TLNELQETEARLLSFAKGFrNLSFEFHGL 258
                     *************966679*********************998552233325589*******....99***************9758*******8 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleak 274
                         l+  +l ++ + ++E++aVnl++++      +++ +   +e+Lk+v sl+P vv+vveq++ +    +sFl rf+e+l+y++a+fdsl+  
  XP_019180323.1 259 ----LKGSNLGNIVTLENETTAVNLSFHVNDN---RLTADI--SETLKAVHSLRPSVVTVVEQDVICrkLPQSFLSRFMESLHYFAAMFDSLDDC 344
                     ....777788999999***********55444...444444..88*******************666325689********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..............yrveee 354
                     lp +s+er ++E++ lgrei++v     +++ er++        le+ GF +++ls+k+++qaklll+  + s                +rv e+
  XP_019180323.1 345 LPIDSHERLSIENH-LGREIKSVMNFDDQRHDERER------VLLESGGFCEMELSSKNVMQAKLLLKIRShSPSsssssssscvnnggFRVVER 432
                     **************.*******99998887666665......99***********************8544222211111111111112666544 PP

            GRAS 355 .sgslv.lgWkdrpLvsvSaWr 374
                      +g  + l W+dr L+++SaW+
  XP_019180323.1 433 dDGKGIsLAWQDRCLITASAWQ 454
                     5666666**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MESINDEDEF LSLKLAIATQ QPLGCERNKK RKRREDLVSI SSYEEEIYSL LQIGEQMLNS  60
THKTSKESSG GREGLHLINL LLVAAAAVND NNLTSAMANL SELCQNVSVL GDAIQRVSAY  120
FAAALTARLL TQKSPFYHTI MKPPTSQEEF LAFTHLYKVS PLYQFAHFTA NQAIIEAFEN  180
ENKPSLHVID FDISHGFQWP SLIQSLSQNI TTTPALLNRI SLRITGFATT LNELQETEAR  240
LLSFAKGFRN LSFEFHGLLK GSNLGNIVTL ENETTAVNLS FHVNDNRLTA DISETLKAVH  300
SLRPSVVTVV EQDVICRKLP QSFLSRFMES LHYFAAMFDS LDDCLPIDSH ERLSIENHLG  360
REIKSVMNFD DQRHDERERV LLESGGFCEM ELSSKNVMQA KLLLKIRSHS PSSSSSSSSS  420
CVNNGGFRVV ERDDGKGISL AWQDRCLITA SAWQCCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-51GRAS family protein