PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180274.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 730aa MW: 84615.4 Da PI: 8.6134

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.3	7.8e-21	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF+vr +++++ r g++ + +Cs+eg+++e+k++ ++++rr+r+++r+gCka++ ++k k+g ++v+++el H+H l+ XP_019180274.1 35 DFYIKYAKEVGFDVRHGTKRQN-RAGQVAIKYIMCSREGYKAETKETpnnpNQRKRRRRVSNRVGCKARMGMSKCKSGGYKVHTIELRHTHCLC 127 6**************99998.6666999999*******9999999999***********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MEIGADGAKF WTPATDNEKT PYEGQQFETV EAGIDFYIKY AKEVGFDVRH GTKRQNRAGQ 60 VAIKYIMCSR EGYKAETKET PNNPNQRKRR RRVSNRVGCK ARMGMSKCKS GGYKVHTIEL 120 RHTHCLCSEE GRTFLKINRQ LDIGHKTFLA NCAKANIGPT KAFRLFKEMV GSFTEVGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEEMFKRK EDNPHFYFDF DIDEEAQLTR LFWADAESRR 240 NFACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRCITFA GGLIAKEDIE SYEWLLTKFK 300 DAMEYTPRCT ITDQDPALKV VIPQTMPTTR HRFCMWHIMT KVGEKVGVTL WHNEDFKKDL 360 NSTVWDDTLT IEEFESKWKT VMKQYNLEEH RWFTQLYEAR ASWIPAYFHN IPMEGLLRTT 420 SRSESTNSYF GKFINPHCSL VEFMAQYNSA IGEQRHNQLK VIAENEGSYP KTKSPLSIEK 480 HAAKIYTISI FYEIQQEIWE AGFTCHIRDQ TKEGEIWKYR IEDTSGKMFE VTQHPASKNI 540 ECACNKFNRM GLLCRHVVLV MKAEGYDTIP EKYIVTRWTR SACAHPMYDV PWATKTNNTK 600 TNEATKMANK LWSEFYTCMG LAKGWPDRMD QMLATLQQLK KDLEMEMQET HENGNNKSAF 660 ERLIGAHRPG DIQIKPPTVA KNKGSGRRIK SNKEKATEKR HSKKERTCNI CDLPGHNSRT 720 CPDKVTPYES

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MEIGADGAKF WTPATDNEKT PYEGQQFETV EAGIDFYIKY AKEVGFDVRH GTKRQNRAGQ  60
VAIKYIMCSR EGYKAETKET PNNPNQRKRR RRVSNRVGCK ARMGMSKCKS GGYKVHTIEL  120
RHTHCLCSEE GRTFLKINRQ LDIGHKTFLA NCAKANIGPT KAFRLFKEMV GSFTEVGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEEMFKRK EDNPHFYFDF DIDEEAQLTR LFWADAESRR  240
NFACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRCITFA GGLIAKEDIE SYEWLLTKFK  300
DAMEYTPRCT ITDQDPALKV VIPQTMPTTR HRFCMWHIMT KVGEKVGVTL WHNEDFKKDL  360
NSTVWDDTLT IEEFESKWKT VMKQYNLEEH RWFTQLYEAR ASWIPAYFHN IPMEGLLRTT  420
SRSESTNSYF GKFINPHCSL VEFMAQYNSA IGEQRHNQLK VIAENEGSYP KTKSPLSIEK  480
HAAKIYTISI FYEIQQEIWE AGFTCHIRDQ TKEGEIWKYR IEDTSGKMFE VTQHPASKNI  540
ECACNKFNRM GLLCRHVVLV MKAEGYDTIP EKYIVTRWTR SACAHPMYDV PWATKTNNTK  600
TNEATKMANK LWSEFYTCMG LAKGWPDRMD QMLATLQQLK KDLEMEMQET HENGNNKSAF  660
ERLIGAHRPG DIQIKPPTVA KNKGSGRRIK SNKEKATEKR HSKKERTCNI CDLPGHNSRT  720
CPDKVTPYES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	QRKRRRR
2	87	91	RKRRR
3	88	93	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-90	FAR1 family protein