PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180230.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 813aa MW: 91141.9 Da PI: 8.5711

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.7e-22	121	219	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ Y++ GF+vr s+ k+ r+g +++r +vCs++g + +k ++k+rr+r+++r+gC+akl +kk+++g+++v+k++++H XP_019180230.1 121 EFYKIYGRANGFDVRHSSVKRD-RSGDVIRRSLVCSRQGAKGGGGRKptldvrgtssSNKQRRRRVSNRVGCNAKLGLKKKSTGEFVVSKFVEDH 214 6**************99998.7788**********99999999***9999******************************* PP FAR1 86 nHela 90 nH+l+ XP_019180230.1 215 NHSLC 219 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence
MDAHGDGHPT AGAVEHGVTG ILPTPLFSFD VLLYDRIAAF FTPYPPAIDG NAPSLASKQN 60 PNPLPATILS GSIDGDFGTR DATHYTPGKT NTLNQHWKPN VDTTIIPVLG QCFKSVYEGV 120 EFYKIYGRAN GFDVRHSSVK RDRSGDVIRR SLVCSRQGAK GGGGRKPTLD VRGTSSSNKQ 180 RRRRVSNRVG CNAKLGLKKK STGEFVVSKF VEDHNHSLCS EGAKLFMRGN RKLNVAQQAF 240 LADCLKVNVG PSTGYRLCRE VAGSFENVGA TYVEFHNFKR DLQMYVDVAD GEMIIERFKT 300 KREACDSFFF DYHLDEENRI ARLFWADPIG RRSFSCYGDV ISFDATYSTN RHNLVFVPFT 360 GVDNHKRCIT FAVGLLSKED VESYSWLLER FNLAMGKAPL CAVTDQDPAM KIAMEQVLPG 420 CRHRFCMWHI MTKVSEKVSP ELSNNEEFRK SLNDIVWNET ASTGDYEVQW QLLMEKYNLS 480 DHRWFQKLYA ERNHWIPAFF LDLPMSGLVR TTSRSEAQNS VYGKFTRLHS SLVEFYMQTE 540 SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFTL TIFYALQKEI EAACFYCEVV 600 GIREDGGTIY YNIGGDCTTT HTVQYKPSGC IAFCSCKMFQ RLGLICRHMF LVFKSAHIEQ 660 LPSQYVVERW RKHLGCGACR GRRSDGDPPK SGASELWSEI QTCVGMVGES MVRQARMVEV 720 LKELRYEFAS DGTIICEAKG NRAAIEALCG VKPPPCITIK PPAQAKNIGS GKRIKSTREI 780 AIENSGKAGR KCGVCGEYAR HNARSCPSKQ RAV

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence

MDAHGDGHPT AGAVEHGVTG ILPTPLFSFD VLLYDRIAAF FTPYPPAIDG NAPSLASKQN  60
PNPLPATILS GSIDGDFGTR DATHYTPGKT NTLNQHWKPN VDTTIIPVLG QCFKSVYEGV  120
EFYKIYGRAN GFDVRHSSVK RDRSGDVIRR SLVCSRQGAK GGGGRKPTLD VRGTSSSNKQ  180
RRRRVSNRVG CNAKLGLKKK STGEFVVSKF VEDHNHSLCS EGAKLFMRGN RKLNVAQQAF  240
LADCLKVNVG PSTGYRLCRE VAGSFENVGA TYVEFHNFKR DLQMYVDVAD GEMIIERFKT  300
KREACDSFFF DYHLDEENRI ARLFWADPIG RRSFSCYGDV ISFDATYSTN RHNLVFVPFT  360
GVDNHKRCIT FAVGLLSKED VESYSWLLER FNLAMGKAPL CAVTDQDPAM KIAMEQVLPG  420
CRHRFCMWHI MTKVSEKVSP ELSNNEEFRK SLNDIVWNET ASTGDYEVQW QLLMEKYNLS  480
DHRWFQKLYA ERNHWIPAFF LDLPMSGLVR TTSRSEAQNS VYGKFTRLHS SLVEFYMQTE  540
SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFTL TIFYALQKEI EAACFYCEVV  600
GIREDGGTIY YNIGGDCTTT HTVQYKPSGC IAFCSCKMFQ RLGLICRHMF LVFKSAHIEQ  660
LPSQYVVERW RKHLGCGACR GRRSDGDPPK SGASELWSEI QTCVGMVGES MVRQARMVEV  720
LKELRYEFAS DGTIICEAKG NRAAIEALCG VKPPPCITIK PPAQAKNIGS GKRIKSTREI  780
AIENSGKAGR KCGVCGEYAR HNARSCPSKQ RAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-91	FAR1 family protein