PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019180130.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 321aa MW: 35293.3 Da PI: 6.7222

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019180130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.1	3.6e-33	152	210	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt++ C vkk+vers+edp++v++tYeg+H h+ XP_019180130.1 152 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTPACGVKKRVERSSEDPSTVVTTYEGTHGHP 210 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MVNPAFSDQI PATFSLQTLF DIPSSDQTDH PKNPPSSSFF DYLFPSQDYS ATVFDLLQTP 60 PPLLIPPPPP PPSQPLPESS EAVNTPATPN SSSISSSSNE AAIDDQLPKT TAEEVEQESD 120 RSKKQLKPKR KNQKREREPR VAFMTKSEVD HLDDGYRWRK YGQKAVKNSP FPRSYYRCTT 180 PACGVKKRVE RSSEDPSTVV TTYEGTHGHP CPVTPRATVG IIMPEASNFG SVSAPGGGTG 240 SPSSSSFVIP HHHFHYPMPQ QQQPFFAITS PLPPPLSYTP STGNQERRFA VPSSSSPAAR 300 DDGLLQDMLP FRLRKEPGSE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	6e-45	WRKY family protein