PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179817.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1093aa MW: 122388 Da PI: 8.5484

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	46	79	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W++eE e ++da +++ ++ Wk++a+ ++ +R+ XP_019179817.1 46 QWSKEELESFYDAYREYNKD-WKKVAAAVQ-NRSVD 79 6***************99.*****.975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence
MAPPRQPRSL NKRHSNRNDV SLSNDGDSSK KNMQRKRKYI DMLGPQWSKE ELESFYDAYR 60 EYNKDWKKVA AAVQNRSVDM VEALYTMNRA YLSLPEGIAS VVGLIAMMTD HYCNLVGSDS 120 DQENNEGAGT TRNPQKRARC KVQASKASDL HPSTVASGYD CLALLKSKCS KGDQTRVVGK 180 RTPRFPVSRS NENFKAKKYF SPSRQDLKIN LDAHDDEVAR EIALALAEAS HRGGSPQVSQ 240 TPIHGTDSAL SSPAWTTESN HANLEIANAK VLSSEMDREG SMEVDTRELS SCRNYLMEPG 300 SVGKTMQKGR RLNEKKLKAG ESGDYNFHDI KEVCSGTEDH RLGAVRKKHE MEILNEKVSK 360 TCSQGFRKRS KKVLFQRDEG STFDALQTLA ELSLMMPATE NDDESTDQVK DENNHNGESE 420 SLEAIPKNLP RDNCGSSGVK SKWSRRISGI VVASSKASKH VKVSCGAIAS PETTEVRKTP 480 KKLVSKMQTS EACPSNYLSE SQEYETKEAP KKLINKGKRS SQNATPKITK NKKHSVSADP 540 GINGSDSAQS IAEIPAPDGA TLCTKVRSRR KIELKKPQKQ KDLMLPDKIL DDNNDRPSAS 600 VHDNVSNLKK RLSNCLSDDH VRKWCMFEWF YSAIDYPWFA KKEFVEYLHH VGLGHVPRLT 660 RVEWSVIRSS LGKPRRFSVQ FLKEEKEKLN QYRESVRRHY TELCEGTREG LPTDLARPLS 720 VGQRVIAIHP KTMEIHDGSV LTVDHSRCRI QFDLPDLGVE FVKDIDCMPQ NPYENMPTLL 780 ARHIDALDLS FENTPKHKVK AQSNESMKFS SGVLENGDGF LNLSPMNFAI NNLLTQTKVT 840 TSSADWQSNI GTMEPATAYS QPSKMAQHQA KEADVRALAE LMHALDKKHA VIAELRHMND 900 DVMEDQKSSD CTLMDLEPFR KQYATIVLQL KEVNKQVSSA LFHLRQRNTY QDNLSPRPVA 960 NFCDPGDMLN TYDHYTGQAQ EPGSHVNETI ESSKIKARIM VDSVLQAPDS TLNRPVNGNE 1020 ADIPSELISR CVATFLMIQK CTEREFPPAG VAKILDSAVA SLQPRCSQNL PVYTEIQKCI 1080 GVIKNQILAL VPT

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence

MAPPRQPRSL NKRHSNRNDV SLSNDGDSSK KNMQRKRKYI DMLGPQWSKE ELESFYDAYR  60
EYNKDWKKVA AAVQNRSVDM VEALYTMNRA YLSLPEGIAS VVGLIAMMTD HYCNLVGSDS  120
DQENNEGAGT TRNPQKRARC KVQASKASDL HPSTVASGYD CLALLKSKCS KGDQTRVVGK  180
RTPRFPVSRS NENFKAKKYF SPSRQDLKIN LDAHDDEVAR EIALALAEAS HRGGSPQVSQ  240
TPIHGTDSAL SSPAWTTESN HANLEIANAK VLSSEMDREG SMEVDTRELS SCRNYLMEPG  300
SVGKTMQKGR RLNEKKLKAG ESGDYNFHDI KEVCSGTEDH RLGAVRKKHE MEILNEKVSK  360
TCSQGFRKRS KKVLFQRDEG STFDALQTLA ELSLMMPATE NDDESTDQVK DENNHNGESE  420
SLEAIPKNLP RDNCGSSGVK SKWSRRISGI VVASSKASKH VKVSCGAIAS PETTEVRKTP  480
KKLVSKMQTS EACPSNYLSE SQEYETKEAP KKLINKGKRS SQNATPKITK NKKHSVSADP  540
GINGSDSAQS IAEIPAPDGA TLCTKVRSRR KIELKKPQKQ KDLMLPDKIL DDNNDRPSAS  600
VHDNVSNLKK RLSNCLSDDH VRKWCMFEWF YSAIDYPWFA KKEFVEYLHH VGLGHVPRLT  660
RVEWSVIRSS LGKPRRFSVQ FLKEEKEKLN QYRESVRRHY TELCEGTREG LPTDLARPLS  720
VGQRVIAIHP KTMEIHDGSV LTVDHSRCRI QFDLPDLGVE FVKDIDCMPQ NPYENMPTLL  780
ARHIDALDLS FENTPKHKVK AQSNESMKFS SGVLENGDGF LNLSPMNFAI NNLLTQTKVT  840
TSSADWQSNI GTMEPATAYS QPSKMAQHQA KEADVRALAE LMHALDKKHA VIAELRHMND  900
DVMEDQKSSD CTLMDLEPFR KQYATIVLQL KEVNKQVSSA LFHLRQRNTY QDNLSPRPVA  960
NFCDPGDMLN TYDHYTGQAQ EPGSHVNETI ESSKIKARIM VDSVLQAPDS TLNRPVNGNE  1020
ADIPSELISR CVATFLMIQK CTEREFPPAG VAKILDSAVA SLQPRCSQNL PVYTEIQKCI  1080
GVIKNQILAL VPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein