PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179746.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 456aa MW: 47976.9 Da PI: 8.1934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	48	71	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H++ XP_019179746.1 48 ADCIYYLRTGLCGYGARCRFNHPR 71 68********************96 PP
2	zf-CCCH	27.5	5.3e-09	76	95	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tG Ck+G +Ck++H++ XP_019179746.1 76 YYMKTGMCKFGVSCKYHHPR 95 8*****************96 PP
3	zf-CCCH	39.5	9.1e-13	115	140	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_019179746.1 115 GEKECSYYMKTGQCKFGVTCKFHHPQ 140 7899********************97 PP
4	zf-CCCH	40.4	4.8e-13	281	307	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ XP_019179746.1 281 PGEPECQYYMKTGDCKYGSSCRYHHPQ 307 5799*********************97 PP
5	zf-CCCH	31.8	2.5e-10	330	353	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++++G Ck+G++CkF H++ XP_019179746.1 330 PVCLHYSQNGVCKFGPTCKFDHPM 353 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG 60 YGARCRFNHP RDRSLYYMKT GMCKFGVSCK YHHPRQGGGS SLVMMNIYGY PLRPGEKECS 120 YYMKTGQCKF GVTCKFHHPQ PAGAEMPAPT AAPGPLPAAP SIYPAVQSPS AQSSQQFGVM 180 AGNWSIARPA LLHGSYMPGA YSPMLFPPGV VPVPGGWTPY PAPVNPAASP STQSAAGAGQ 240 FYGLTPLSPS APAYSGVYMY AGSATGPSRV SQREHAFPER PGEPECQYYM KTGDCKYGSS 300 CRYHHPQEWS GSKANFVLSP IGLPLRPDAP VCLHYSQNGV CKFGPTCKFD HPMGTLSYSP 360 SASSLADMPV APFPVGSSMG TLAPSSSSSD LRPNLTSGSN TEAFSTQISS MNTSSGTVGS 420 IFSVTGPAPR PGLQQSGQSY SASGSSSMGH GGELKD

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG  60
YGARCRFNHP RDRSLYYMKT GMCKFGVSCK YHHPRQGGGS SLVMMNIYGY PLRPGEKECS  120
YYMKTGQCKF GVTCKFHHPQ PAGAEMPAPT AAPGPLPAAP SIYPAVQSPS AQSSQQFGVM  180
AGNWSIARPA LLHGSYMPGA YSPMLFPPGV VPVPGGWTPY PAPVNPAASP STQSAAGAGQ  240
FYGLTPLSPS APAYSGVYMY AGSATGPSRV SQREHAFPER PGEPECQYYM KTGDCKYGSS  300
CRYHHPQEWS GSKANFVLSP IGLPLRPDAP VCLHYSQNGV CKFGPTCKFD HPMGTLSYSP  360
SASSLADMPV APFPVGSSMG TLAPSSSSSD LRPNLTSGSN TEAFSTQISS MNTSSGTVGS  420
IFSVTGPAPR PGLQQSGQSY SASGSSSMGH GGELKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-133	C3H family protein