PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019179745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 477aa MW: 50120.4 Da PI: 8.3584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.7e-11 | 48 | 71 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H++ XP_019179745.1 48 ADCIYYLRTGLCGYGARCRFNHPR 71 68********************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+++++tG Ck+G +Ck++H++ XP_019179745.1 93 QPLCQYYMKTGMCKFGVSCKYHHPR 117 79*********************96 PP | |||||||
3 | zf-CCCH | 39.5 | 9.6e-13 | 137 | 162 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_019179745.1 137 GEKECSYYMKTGQCKFGVTCKFHHPQ 162 7899********************97 PP | |||||||
4 | zf-CCCH | 40.4 | 5e-13 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ XP_019179745.1 303 PGEPECQYYMKTGDCKYGSSCRYHHPQ 329 5799*********************97 PP | |||||||
5 | zf-CCCH | 31.7 | 2.6e-10 | 352 | 375 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++++G Ck+G++CkF H++ XP_019179745.1 352 PVCLHYSQNGVCKFGPTCKFDHPM 375 78********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence |
MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG 60 YGARCRFNHP RDRSLAVRAM RASGGEYPER VGQPLCQYYM KTGMCKFGVS CKYHHPRQGG 120 GSSLVMMNIY GYPLRPGEKE CSYYMKTGQC KFGVTCKFHH PQPAGAEMPA PTAAPGPLPA 180 APSIYPAVQS PSAQSSQQFG VMAGNWSIAR PALLHGSYMP GAYSPMLFPP GVVPVPGGWT 240 PYPAPVNPAA SPSTQSAAGA GQFYGLTPLS PSAPAYSGVY MYAGSATGPS RVSQREHAFP 300 ERPGEPECQY YMKTGDCKYG SSCRYHHPQE WSGSKANFVL SPIGLPLRPD APVCLHYSQN 360 GVCKFGPTCK FDHPMGTLSY SPSASSLADM PVAPFPVGSS MGTLAPSSSS SDLRPNLTSG 420 SNTEAFSTQI SSMNTSSGTV GSIFSVTGPA PRPGLQQSGQ SYSASGSSSM GHGGIGT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-145 | C3H family protein |