PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179744.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 478aa    MW: 50334.6 Da    PI: 8.2607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114871427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C +++rtG C yG+rC+F+H++
  XP_019179744.1 48 ADCIYYLRTGLCGYGARCRFNHPR 71
                    68********************96 PP

2zf-CCCH38.12.6e-1293117327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC+++++tG Ck+G +Ck++H++
  XP_019179744.1  93 QPLCQYYMKTGMCKFGVSCKYHHPR 117
                     79*********************96 PP

3zf-CCCH39.59.7e-13137162227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  XP_019179744.1 137 GEKECSYYMKTGQCKFGVTCKFHHPQ 162
                     7899********************97 PP

4zf-CCCH40.45e-13303329127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG CkyG++C+++H++
  XP_019179744.1 303 PGEPECQYYMKTGDCKYGSSCRYHHPQ 329
                     5799*********************97 PP

5zf-CCCH31.72.6e-10352375427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C +++++G Ck+G++CkF H++
  XP_019179744.1 352 PVCLHYSQNGVCKFGPTCKFDHPM 375
                     78********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MERHSGTQAM EGGAAGVVSA ATTGLEEPLW QLSLSGGPES YPERPNDADC IYYLRTGLCG  60
YGARCRFNHP RDRSLAVRAM RASGGEYPER VGQPLCQYYM KTGMCKFGVS CKYHHPRQGG  120
GSSLVMMNIY GYPLRPGEKE CSYYMKTGQC KFGVTCKFHH PQPAGAEMPA PTAAPGPLPA  180
APSIYPAVQS PSAQSSQQFG VMAGNWSIAR PALLHGSYMP GAYSPMLFPP GVVPVPGGWT  240
PYPAPVNPAA SPSTQSAAGA GQFYGLTPLS PSAPAYSGVY MYAGSATGPS RVSQREHAFP  300
ERPGEPECQY YMKTGDCKYG SSCRYHHPQE WSGSKANFVL SPIGLPLRPD APVCLHYSQN  360
GVCKFGPTCK FDHPMGTLSY SPSASSLADM PVAPFPVGSS MGTLAPSSSS SDLRPNLTSG  420
SNTEAFSTQI SSMNTSSGTV GSIFSVTGPA PRPGLQQSGQ SYSASGSSSM GHGGELKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-145C3H family protein