PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019179350.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 643aa MW: 70006.7 Da PI: 7.3281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019179350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.2e-16	414	461	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_019179350.1 414 QVHNLSERRRRDRINEKMRALQELIPNC-----NKTDKASMLDEAIEYLKTLQ 461 57***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MPLSEFLKLH NLEFGEPKTA SSSPDFLENE VVELVWENGQ IVMQGQSSRG KRNPTSNNLS 60 SEMPVIRDKP KENPSSRGIR GKAFLMDEMA LSVPTNEMDL SQDDEIVPWL NYSLNNNSLQ 120 YEYSSGVVPE ASGLSANELP AQNNFVSMDK TDGSNLMAVN NSSPRNDNRF GLFPSWSYKA 180 HHPSVPSLGS DIGISNASNN QDSILRDSVD TKMQKQESSI LGRGPPGLLN FSHFSRPVSH 240 ARANTGNIAA SPAIENKEKE LSANWRNPVN PAPAQTCSTS KREMDRHNQP DLQCFKIDHR 300 PVIAKTHDTS LSEDMKKNNN NNNNNQYGQP IDPVVNKGVL GGDKAVEPGA VCSSVCSGSS 360 PERTSNDQSY TLKRKYCDLE SGSQSEDIEE ESLDVRTEAP VRGGTGSKRS RAAQVHNLSE 420 RRRRDRINEK MRALQELIPN CNKTDKASML DEAIEYLKTL QFQLQIMSMG AGFCVPPIIY 480 PAGMHATQMP YFPPMGLGMG MGMGMGVGMG MGFGMGIHEM NGRSPGYPLF PISPMQRVQL 540 SSLPFSGPST FPGIAASNFP VFGHPGLGIP ISIPKAPTIS KSGQPARSSA VGMGASRMGI 600 QVEVPCTSAT LKPEDLVKTK SSQLMNNTDP NRSINQTSSQ RKA

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MPLSEFLKLH NLEFGEPKTA SSSPDFLENE VVELVWENGQ IVMQGQSSRG KRNPTSNNLS  60
SEMPVIRDKP KENPSSRGIR GKAFLMDEMA LSVPTNEMDL SQDDEIVPWL NYSLNNNSLQ  120
YEYSSGVVPE ASGLSANELP AQNNFVSMDK TDGSNLMAVN NSSPRNDNRF GLFPSWSYKA  180
HHPSVPSLGS DIGISNASNN QDSILRDSVD TKMQKQESSI LGRGPPGLLN FSHFSRPVSH  240
ARANTGNIAA SPAIENKEKE LSANWRNPVN PAPAQTCSTS KREMDRHNQP DLQCFKIDHR  300
PVIAKTHDTS LSEDMKKNNN NNNNNQYGQP IDPVVNKGVL GGDKAVEPGA VCSSVCSGSS  360
PERTSNDQSY TLKRKYCDLE SGSQSEDIEE ESLDVRTEAP VRGGTGSKRS RAAQVHNLSE  420
RRRRDRINEK MRALQELIPN CNKTDKASML DEAIEYLKTL QFQLQIMSMG AGFCVPPIIY  480
PAGMHATQMP YFPPMGLGMG MGMGMGVGMG MGFGMGIHEM NGRSPGYPLF PISPMQRVQL  540
SSLPFSGPST FPGIAASNFP VFGHPGLGIP ISIPKAPTIS KSGQPARSSA VGMGASRMGI  600
QVEVPCTSAT LKPEDLVKTK SSQLMNNTDP NRSINQTSSQ RKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	425	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-45	bHLH family protein