PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019179134.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 152aa    MW: 17289.5 Da    PI: 8.5879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019179134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.3e-105880527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f rtG C+yG++C++ H++
  XP_019179134.1 58 VCNRFVRTGSCQYGESCRYYHPK 80
                    6********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MPLGKYNCDY CDKEFRDTPA ARRRHLQGIQ HQRAKALWYN SLLNPLVHND PESFGKGVCN  60
RFVRTGSCQY GESCRYYHPK QNTQNMNLER IRGNAFNDDI LKHNLHCQAF GATSFPGDMF  120
RDKTGASLGT LPPSLMPPPE GGYPPLPFLD WG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-31C3H family protein