PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019178968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18441.4 Da PI: 8.2892 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.3 | 5.2e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_019178968.1 7 CSGCRTILLYPRGATNVCCAVCNA 30 **********************97 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.5e-15 | 49 | 73 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV XP_019178968.1 49 CGGCRTLLMHPRGATSVRCSCCHTV 73 ************************9 PP | |||||||
3 | zf-LSD1 | 44.6 | 2.4e-14 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+++ XP_019178968.1 87 CGNCRTMLMYPCGAPSVKCAVCHFI 111 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MGQMAQLICG GCRTLLMHPR 60 GATSVRCSCC HTVNLVPGPN QFAHINCGNC RTMLMYPCGA PSVKCAVCHF ITNVNAGDAR 120 VPIPSHPPNG SATSSSAPPS STAAPRSQNQ TVVVQNPMSV DESGKLVSNV VVGVTTTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 8e-60 | LSD family protein |