PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178808.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 475aa MW: 53933.9 Da PI: 5.3933

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	419	467	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ E++ l +v+++G+g+Wk I + + Rt+ ++k++w++ XP_019178808.1 419 KKWSLVEEDTLRTGVERYGKGNWKFILQAYRdifEERTEVDLKDKWRNM 467 68*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDIDPDISRW ILEFLLRNPL DDGTSNALIR VLAPANDNLG LKKTVLLRAM ELEVLNGSVT 60 EKMLGLLEKF EELEFREGIQ ASEELKAAYC AVAVDCTVRF LKKNGGEISR GEYFSAVRRI 120 WRQRICRMEK ADTSGLVSKE LGNWRDAIEA AVWEDSFCDK VIRSEKVDVV EAVQVFVKEA 180 KDRMGSSFLE YTAEMLKNDN NLRELLLSEN REDKGETDGK NDNNMRELLP PENGEEQGEI 240 GGNDAALPSA SQDTAHHNNG RELRHSARKP TKAPLVGTSR GAKIADRDDL RAEAHKQYDL 300 PASPEVNKAQ EALETSFMEL RAVVKDPLPD ALLEAAAIMC QLSKGNMGDQ PIQENASKRS 360 LMERNSTAHV HEWNDSIDSL PEVSGNREIR SQLPTPEKRN ISPLKKYEMN RLTKRRRPKK 420 WSLVEEDTLR TGVERYGKGN WKFILQAYRD IFEERTEVDL KDKWRNMTGP LDKSH

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDIDPDISRW ILEFLLRNPL DDGTSNALIR VLAPANDNLG LKKTVLLRAM ELEVLNGSVT  60
EKMLGLLEKF EELEFREGIQ ASEELKAAYC AVAVDCTVRF LKKNGGEISR GEYFSAVRRI  120
WRQRICRMEK ADTSGLVSKE LGNWRDAIEA AVWEDSFCDK VIRSEKVDVV EAVQVFVKEA  180
KDRMGSSFLE YTAEMLKNDN NLRELLLSEN REDKGETDGK NDNNMRELLP PENGEEQGEI  240
GGNDAALPSA SQDTAHHNNG RELRHSARKP TKAPLVGTSR GAKIADRDDL RAEAHKQYDL  300
PASPEVNKAQ EALETSFMEL RAVVKDPLPD ALLEAAAIMC QLSKGNMGDQ PIQENASKRS  360
LMERNSTAHV HEWNDSIDSL PEVSGNREIR SQLPTPEKRN ISPLKKYEMN RLTKRRRPKK  420
WSLVEEDTLR TGVERYGKGN WKFILQAYRD IFEERTEVDL KDKWRNMTGP LDKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	7e-17	MYB_related family protein