PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178806.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 844aa MW: 93843.4 Da PI: 7.8234

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.3	3.8e-20	322	421	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ e++ XP_019178806.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpYINHSEGIPIRMQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PEGK 414 99************************555667888***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_019178806.1 415 LVMGFRK 421 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MGSNVCMNEL CCSTTSSEWK KGWGLKSGGF AILCYSCGSA YEKVAFCETF HLDESGWKEC 60 RMCRKRIHCG CIASKYLFEY MDLGGIVCLS CARILGGQAL RPIQIPNDDV PSGILAMKNK 120 DDTQTIRVEN RMDENILEKG RLLQLGKSVE AREPIQLFKS RNDDKIKREE PIIPAVEVMS 180 CFPNLNQQSL RTSVLEKAEN CIPKQAVKDA PDSFNQPSLN FSLSTPISTS SSGLPFPSGV 240 GKVSPFQQGQ KPHHILPKPP KAGSNSGFES KSGISTPTRV ARPPAEGRGG RNQLLPRYWP 300 RITDQELQKL SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPY INHSEGIPIR 360 MQDIKGKEWT FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDTVTFSRID PEGKLVMGFR 420 KATNNAEMQV SQNSTPANGG CSTEIPLSGA TDNHTNGGRE TDKPLQRNVL SPEKKKVRNI 480 GCKNKRLLMH SEDAMELRIT WEEAQELLRP PPTVNPTIVV IENHEFEEYD EPPVFGKRTI 540 FTSRSSGEHE QWAQCDNCSK WRRLPVHVLL PANWTCSDNV WDSNRCSCSA PNEMNQKELD 600 AFLRVSKETK RRRIVESSND GEPSGLDALA TVAVLGESMS ELGEPSAGAT TKHPRHRPGC 660 SCIVCIQPPS GKGKHEATCK CNVCLTVKRR FKTLMQRKKK KQSERELELA QGKDKDKLPR 720 KDAAAANEPT SIPMNHPENE AYQKEDRHDA MEEDVGTSKG QLDLNCHPNR EDDMQPEEAS 780 GLLCINTGAD TDLPSRTYNL AMTTGKCLLA QTTEETKGKQ SNHPDNNRHI TPAETKSENE 840 PAQG

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MGSNVCMNEL CCSTTSSEWK KGWGLKSGGF AILCYSCGSA YEKVAFCETF HLDESGWKEC  60
RMCRKRIHCG CIASKYLFEY MDLGGIVCLS CARILGGQAL RPIQIPNDDV PSGILAMKNK  120
DDTQTIRVEN RMDENILEKG RLLQLGKSVE AREPIQLFKS RNDDKIKREE PIIPAVEVMS  180
CFPNLNQQSL RTSVLEKAEN CIPKQAVKDA PDSFNQPSLN FSLSTPISTS SSGLPFPSGV  240
GKVSPFQQGQ KPHHILPKPP KAGSNSGFES KSGISTPTRV ARPPAEGRGG RNQLLPRYWP  300
RITDQELQKL SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPY INHSEGIPIR  360
MQDIKGKEWT FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDTVTFSRID PEGKLVMGFR  420
KATNNAEMQV SQNSTPANGG CSTEIPLSGA TDNHTNGGRE TDKPLQRNVL SPEKKKVRNI  480
GCKNKRLLMH SEDAMELRIT WEEAQELLRP PPTVNPTIVV IENHEFEEYD EPPVFGKRTI  540
FTSRSSGEHE QWAQCDNCSK WRRLPVHVLL PANWTCSDNV WDSNRCSCSA PNEMNQKELD  600
AFLRVSKETK RRRIVESSND GEPSGLDALA TVAVLGESMS ELGEPSAGAT TKHPRHRPGC  660
SCIVCIQPPS GKGKHEATCK CNVCLTVKRR FKTLMQRKKK KQSERELELA QGKDKDKLPR  720
KDAAAANEPT SIPMNHPENE AYQKEDRHDA MEEDVGTSKG QLDLNCHPNR EDDMQPEEAS  780
GLLCINTGAD TDLPSRTYNL AMTTGKCLLA QTTEETKGKQ SNHPDNNRHI TPAETKSENE  840
PAQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	610	614	KRRRI
2	688	699	KRRFKTLMQRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein