PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019178781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 17986.9 Da PI: 7.2431 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.9 | 1.7e-38 | 14 | 110 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+k C++ pyfp ++p++fa+vh++FGasn++k+l+++p + r da+ s+vyeA ar+rdP+yG+vg+i+ lq+++ +l+++l+ XP_019178781.1 14 PCAACKLLRRRCTKYCIFLPYFPPTHPERFAAVHQIFGASNITKMLQEVPVDSRADAVMSMVYEATARLRDPIYGCVGIISILQKNVFELQSKLN 108 7******************************************************************************************9998 PP DUF260 96 ll 97 + XP_019178781.1 109 ES 110 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MMSSTSSNKN SIMPCAACKL LRRRCTKYCI FLPYFPPTHP ERFAAVHQIF GASNITKMLQ 60 EVPVDSRADA VMSMVYEATA RLRDPIYGCV GIISILQKNV FELQSKLNES VAETMALKTQ 120 LSNVLSSSLL YDPALPDTML LTSDLSNSSQ PAEFLNPEPY IV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-49 | LBD family protein |