PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178653.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 842aa MW: 93181 Da PI: 6.7624

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.8	5.6e-20	330	429	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++ XP_019178653.1 330 FEKVLSASDAGRIGRLVLPKACAEAYfpAINHSEGIAIRVQDIKGQEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGK 422 99************************888999**************99899999999.*******************887.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_019178653.1 423 LVMGYRK 429 7777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence
MGSKFCMNEL CRATTSSEWK KGWGLKSGGF ATLCSNCGSA YEHFAFCDMF HLNDSGWREC 60 RMCGKRIHCG CIASRYLYDY MDFGGIGCMS CVRRLGGHAL RPIQTPNDDI PNGTLTMNKI 120 GDTQRVDTEN RMDENDFDKG RLLHLSRTIE AHKPGQLFQS QNNGKIKQEP AIPIREAACL 180 PNLNQQSVET SIFGKADINI PKQGVNVNVK DTYESINQTS MNFSLSTPVG TSTSALHILA 240 GIVEGREQNK VSPFQQGQKA HHILPKPVKA AHSSGSESKK GMTTPNRIAR PPGEGRGGRN 300 QLLPRYWPRI TDQELQKLSG DLKSNIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPAIN 360 HSEGIAIRVQ DIKGQEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPG 420 GKLVMGYRKA TNNADAQDSP NPPLPNGGSC AETQVSGATD NDMKNESKAI DDPLPRTVSI 480 PEKKKTRNIG SKNKRLLMQA KDALELKITW EEAQDLLRPP PSGKPTIVVI EECEFEEYEE 540 PPVFGKRTIF TARPSGEQDQ WAQCDSCSKW RRLPMHALLP PRWTCLDNIW DANRCSCSAP 600 DELSPKEMDA FLRDNMDSKR RRITENGHDC EPSGLDALAT VAVLGDNIGD LGEPSVGVGA 660 TTRHPRHRPG CSCIVCIQPP SGKGKHLPTC KCNVCLTVRR RFKTLMLRKK KKQSEREAEL 720 GQGNEEPPRD GSEIEGASGL ALIHMNHSEN DSNPNGDNDP MEDAGTSKGQ LDLNCDPNRE 780 DDMLAETPLN EAVEKNDLET LRDCMLAQAA REEEGKRGDD TQIASSDSKQ ENNRENGAQF 840 LD

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence

MGSKFCMNEL CRATTSSEWK KGWGLKSGGF ATLCSNCGSA YEHFAFCDMF HLNDSGWREC  60
RMCGKRIHCG CIASRYLYDY MDFGGIGCMS CVRRLGGHAL RPIQTPNDDI PNGTLTMNKI  120
GDTQRVDTEN RMDENDFDKG RLLHLSRTIE AHKPGQLFQS QNNGKIKQEP AIPIREAACL  180
PNLNQQSVET SIFGKADINI PKQGVNVNVK DTYESINQTS MNFSLSTPVG TSTSALHILA  240
GIVEGREQNK VSPFQQGQKA HHILPKPVKA AHSSGSESKK GMTTPNRIAR PPGEGRGGRN  300
QLLPRYWPRI TDQELQKLSG DLKSNIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPAIN  360
HSEGIAIRVQ DIKGQEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPG  420
GKLVMGYRKA TNNADAQDSP NPPLPNGGSC AETQVSGATD NDMKNESKAI DDPLPRTVSI  480
PEKKKTRNIG SKNKRLLMQA KDALELKITW EEAQDLLRPP PSGKPTIVVI EECEFEEYEE  540
PPVFGKRTIF TARPSGEQDQ WAQCDSCSKW RRLPMHALLP PRWTCLDNIW DANRCSCSAP  600
DELSPKEMDA FLRDNMDSKR RRITENGHDC EPSGLDALAT VAVLGDNIGD LGEPSVGVGA  660
TTRHPRHRPG CSCIVCIQPP SGKGKHLPTC KCNVCLTVRR RFKTLMLRKK KKQSEREAEL  720
GQGNEEPPRD GSEIEGASGL ALIHMNHSEN DSNPNGDNDP MEDAGTSKGQ LDLNCDPNRE  780
DDMLAETPLN EAVEKNDLET LRDCMLAQAA REEEGKRGDD TQIASSDSKQ ENNRENGAQF  840
LD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	619	623	KRRRI
2	699	710	RRRFKTLMLRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein