PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178593.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 615aa    MW: 69297.1 Da    PI: 6.1479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.81.3e-1082416112374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     + lL++cA+a+++ d +++++lLa++++++sp+g+ m+Rla+y+++AL+arl++ ++ ++  l+ s +   + ++ l+a++++ ++sP+ k+s++
  XP_019178593.1 241 RGLLTQCAQAMANYDGRAVTELLAKIRHHSSPRGNGMERLAFYLANALEARLNGAGTAIFT-LQFSGNI--SAANILKAYHMYIKASPFKKISNI 332
                     679***************************************************7777773.4444333..489999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I++ ++g++++H+iDf++ +G+QWp+++q L++Rp+gpp+lRiTg++ p++g   +e++e+tg rL+k++e+++vpfef++ +akr+e++
  XP_019178593.1 333 YANHYIMKMAAGKHALHVIDFGVLYGFQWPCMIQGLSNRPGGPPKLRITGIDLPQPGfkPAERVEATGARLKKYCEQFNVPFEFKA-IAKRWETI 426
                     ********************************************************999***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L+++++E+laVn+ ++l++++de+v  +s+rd vL l+k+++P+++++   +  +ns+ F +rf ea+ ++s+lfd++ea++p+e+e+r+ 
  XP_019178593.1 427 KLEDLEIERDEVLAVNCLFRLENVPDETVVPDSPRDIVLGLIKQIRPDIFIHGVGNGAYNSPFFTTRFREAVFHFSTLFDMFEATVPAEDEDRRL 521
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+ +lgr++ nv+aceg++r+er et+++W+ r ++aGF++v+l+++ +k +k   r  + + ++v+ + ++l++gWk+r ++++S+W+
  XP_019178593.1 522 FEETVLGRNALNVIACEGTARVERPETYKQWQGRNKRAGFRQVALDQELVKIVKDKARSDYHKDFSVDGDGKWLLQGWKGRVVYALSCWK 611
                     **********************************************************999888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    
MEALLQEFYA NTNGFMLNRH SEPAANPKLN GQKRRDLDSF QDFPATGEEE EDYGDYSDAV  60
LKYINQMLME EEDLENRPCM LHDCIALQAT EKYFSDVLHG HGHGDLTSSN ASSDPNDYGG  120
SSDSLLSPPE TQSGSVSPGS DGDFPATNLV LPDNNAMEDR SPPKGKRNHY SNMEDESAEK  180
QRNKQLATYN DDETEPPLEK LNEVLLCNSQ EPRKKPEGAA APPPRRRRKK REPQKEVVDL  240
RGLLTQCAQA MANYDGRAVT ELLAKIRHHS SPRGNGMERL AFYLANALEA RLNGAGTAIF  300
TLQFSGNISA ANILKAYHMY IKASPFKKIS NIYANHYIMK MAAGKHALHV IDFGVLYGFQ  360
WPCMIQGLSN RPGGPPKLRI TGIDLPQPGF KPAERVEATG ARLKKYCEQF NVPFEFKAIA  420
KRWETIKLED LEIERDEVLA VNCLFRLENV PDETVVPDSP RDIVLGLIKQ IRPDIFIHGV  480
GNGAYNSPFF TTRFREAVFH FSTLFDMFEA TVPAEDEDRR LFEETVLGRN ALNVIACEGT  540
ARVERPETYK QWQGRNKRAG FRQVALDQEL VKIVKDKARS DYHKDFSVDG DGKWLLQGWK  600
GRVVYALSCW KPALD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213231RKKPEGAAAPPPRRRRKKR
2225231RRRRKKR
3225232RRRRKKRE
4226231RRRKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-170GRAS family protein