PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178592.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 735aa    MW: 82012.3 Da    PI: 5.8551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.93.6e-1103617321373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ +++ d + a+  L+++++++sp+gd++qRla++f+++L+arla+++++ly+al+p++ +    se+l+a++++   +P+ +++ 
  XP_019178592.1 361 LRSLLTSCAQSIAAADYRTANDQLKKIRKHSSPTGDANQRLASVFANGLEARLAGTGTQLYAALAPKPIT---ASEKLKAYHTYLSFCPFKRIAI 452
                     6899*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I+e +++ +++H+iDf+i +G+QWp L+q L++Rp+gpp+lR+Tg++ p++g   +e++e+tg+rLa+++e++gvpfe+n+++++++e+
  XP_019178592.1 453 FFANKMIYEVASKGHTLHVIDFGILYGFQWPILIQHLSQRPGGPPKLRVTGIELPHPGfrPAEKVEQTGRRLANYCERFGVPFEYNAITSQNWET 547
                     ********************************************************9999*********************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L++ +g+++aVn+ ++ ++llde++  +s+rd+vL+l+++++P++ v +    +++s+ F++rf eal +ysa+fd+++a+l+r++++r 
  XP_019178592.1 548 IKIDDLKLASGDVVAVNCLFRFKNLLDETAVAHSPRDAVLSLIRKINPDIYVQAVISGSYSSPFFVTRFREALFFYSAVFDMFDATLSRDDHQRL 642
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       E+e++grei+nv+aceg er+er et+++W+ r ++aGFkp+p++ + +k+ +  +   + + +  +e+ +++++gWk+r +   S+W
  XP_019178592.1 643 DFEKEFVGREIMNVIACEGMERFERPETYKQWQVRNMRAGFKPLPVKPELVKKLRGKVMAGYHKDFVFDEDGHWILQGWKGRIICGSSCW 732
                     ******************************************************99888877677************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    
MVMDHQFSRL TDSVNRFLLE DENIFSSLKR SPDIPGSYNV DSLPLDIVDA PLVIHDPNLG  60
SYAPTLDSPD DHDSDTVLKY LNQILLEENI DENPSMFYDP IALKAAENSF YEALKDKPPS  120
PHQAPVFVNG YAGSPDSILP SSGGYSTSSS SIGSCNADPQ WIVDPGESKS SVTSYSPEFS  180
FQTSSQTNSY RLNGSLNSFS SVMNAQMDSF VNANLVPNIF SDTESILQFK RGMEEASRFL  240
PTGNQLVIDL DKYSLPPKTD QLSGDAVVKI EKDEKDRSAN FSRGKKHHHP DDSGLEEEER  300
SSKHSAVYEE EVELSEVFDK VLLSTDNNGC NINVEGMEQK GPSGGKGRAK KQGGNSETVD  360
LRSLLTSCAQ SIAAADYRTA NDQLKKIRKH SSPTGDANQR LASVFANGLE ARLAGTGTQL  420
YAALAPKPIT ASEKLKAYHT YLSFCPFKRI AIFFANKMIY EVASKGHTLH VIDFGILYGF  480
QWPILIQHLS QRPGGPPKLR VTGIELPHPG FRPAEKVEQT GRRLANYCER FGVPFEYNAI  540
TSQNWETIKI DDLKLASGDV VAVNCLFRFK NLLDETAVAH SPRDAVLSLI RKINPDIYVQ  600
AVISGSYSSP FFVTRFREAL FFYSAVFDMF DATLSRDDHQ RLDFEKEFVG REIMNVIACE  660
GMERFERPET YKQWQVRNMR AGFKPLPVKP ELVKKLRGKV MAGYHKDFVF DEDGHWILQG  720
WKGRIICGSS CWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein