PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178446.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 689aa MW: 75351.6 Da PI: 6.4665

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3e-09	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd+C +aHg XP_019178446.1 279 PCPDFRK-GTCQRGDSCEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MCSGSRRKEG VDDLGMEGEA QKQEGFMSGF SVLLEFSAAD DLDGFRKAVE EEGCDINESG 60 LWYGRRIGSR KMGNEERTPL LIASYFGSKR VLSYILEKGC VDVNRACGSD GATALHCAVA 120 GGSLALPEVV KLLLDASADA GLVDANGKRA ADLIAPGVFG HRRKTVEHLL KGKSDVEESQ 180 ETGGFGLIDR DTFEQIEEQK VLSPIVLKDG SEKKEYPIDP SLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKFHYTCVPC PDFRKGTCQR GDSCEYAHGI 300 FECWLHPAQY RTRMCKDESS CNRRVCFFAH RPEELRPLYA SIGSAVPSPR SYSLGASPLD 360 IASVSPLALG SPSMMIAPTS TPPLTPSGPS SPRGRSLWPN QISLATPTLQ LPGSRLKTSI 420 HARDSDLDSG LLGLMDEISV LSSPSSQRKS FSTAPSGDLN GEMSRHPGLN PTNLDDIFET 480 LDPNILAKLQ GLLRDNETTH LQSPKGMHLR QNFVSGYPSP HHSSSPVRTP SFQRDPSSAA 540 LNAARSAAFA KRSQSFIDRS APCHHHGMIS SPMSPVTAMP STLSGWGSPD GKLDWGMQKD 600 ELSKLRKSAS FGIRSSSGTT YATTGTPFPT TPADEPDVSW VQSLVRDTPA VSSRQFIDSE 660 DPQYYQGSPE MHPTWGDQQI YMEQEQIMA

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MCSGSRRKEG VDDLGMEGEA QKQEGFMSGF SVLLEFSAAD DLDGFRKAVE EEGCDINESG  60
LWYGRRIGSR KMGNEERTPL LIASYFGSKR VLSYILEKGC VDVNRACGSD GATALHCAVA  120
GGSLALPEVV KLLLDASADA GLVDANGKRA ADLIAPGVFG HRRKTVEHLL KGKSDVEESQ  180
ETGGFGLIDR DTFEQIEEQK VLSPIVLKDG SEKKEYPIDP SLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKFHYTCVPC PDFRKGTCQR GDSCEYAHGI  300
FECWLHPAQY RTRMCKDESS CNRRVCFFAH RPEELRPLYA SIGSAVPSPR SYSLGASPLD  360
IASVSPLALG SPSMMIAPTS TPPLTPSGPS SPRGRSLWPN QISLATPTLQ LPGSRLKTSI  420
HARDSDLDSG LLGLMDEISV LSSPSSQRKS FSTAPSGDLN GEMSRHPGLN PTNLDDIFET  480
LDPNILAKLQ GLLRDNETTH LQSPKGMHLR QNFVSGYPSP HHSSSPVRTP SFQRDPSSAA  540
LNAARSAAFA KRSQSFIDRS APCHHHGMIS SPMSPVTAMP STLSGWGSPD GKLDWGMQKD  600
ELSKLRKSAS FGIRSSSGTT YATTGTPFPT TPADEPDVSW VQSLVRDTPA VSSRQFIDSE  660
DPQYYQGSPE MHPTWGDQQI YMEQEQIMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-178	C3H family protein