PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178259.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 775aa MW: 88319.5 Da PI: 8.3056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.4	2.6e-19	77	173	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA +v F++rk +++ + r+g++ + + Cs+eg++ ++k + t+ ++r+r+++r+gCka++++++ k+g++ v+ +el H+H XP_019178259.1 77 FYRAYAITVDFDIRKGTMRMN-REGKVHIKYMLCSREGFKPPKKGNttatdmvntTQPKKRKRVSKRVGCKARIVITRCKTGNYTVHAVELWHTH 170 9**************9999.66669999999*****99999***99999********************************** PP FAR1 88 ela 90 l+ XP_019178259.1 171 YLC 173 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MDARGNTMAD EDQRNYDANL DSMDDANPGK EHTEEEATDC EMIILPDGTK RWLPTCKSEC 60 TPYEGQQFAT LEDGLAFYRA YAITVDFDIR KGTMRMNREG KVHIKYMLCS REGFKPPKKG 120 NTTATDMVNT TQPKKRKRVS KRVGCKARIV ITRCKTGNYT VHAVELWHTH YLCSDIGRPF 180 LKINRKLDIG HKIFLANCAR ANIGSTKSWR LYKEMVGSFT DIGATSTDFC NFRRDLLAYI 240 AGADAQMVVE DMYKNKEANP DFYFDFDLNE DRQLCRLFWA DAISRKNFAC FGDVMSFDAT 300 YSTNRYKLVF VPFTGVDNHK RSITFGAGLI AREDVESYEW LLKSFKAAMG YTPRCTITDQ 360 DPALKVAIPN IMPKTRHRFC MWHIMSKVGD KAGPALAKNI EFKKALNNAV WDETLSATEF 420 ELKWAKVMQD YNLVEHRWFN QLYEAHASWI PAYFQDIFMG GLLKTTSRSE SENSYFGKFT 480 NHHCSLVEFI MQYNRAIEEQ RHNQAKLNAD CEGSTPEPKT PLGMERQAAA LYTINIFYEF 540 QKEIWAGSFT CKITNKTLEA GNRKYVVHET GAKLYEVTHE EATHKTECSC NKFNRVGILC 600 KHVLAIFKDE GIEEIPAHYI VPRWTRDACA RPMYDIVLKG SPNTQGGTEL KSIANQLWNE 660 FYNCLGLANG SENEMSLMLT TMQQLNGKLK SAKQQANPST SHQSVIESIV NATAPTEIQI 720 KPPNVAKNNG SGKRLKSNKE KAMERTKKKV RTCATCDQPG HDSQNCPERK PIPDE

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MDARGNTMAD EDQRNYDANL DSMDDANPGK EHTEEEATDC EMIILPDGTK RWLPTCKSEC  60
TPYEGQQFAT LEDGLAFYRA YAITVDFDIR KGTMRMNREG KVHIKYMLCS REGFKPPKKG  120
NTTATDMVNT TQPKKRKRVS KRVGCKARIV ITRCKTGNYT VHAVELWHTH YLCSDIGRPF  180
LKINRKLDIG HKIFLANCAR ANIGSTKSWR LYKEMVGSFT DIGATSTDFC NFRRDLLAYI  240
AGADAQMVVE DMYKNKEANP DFYFDFDLNE DRQLCRLFWA DAISRKNFAC FGDVMSFDAT  300
YSTNRYKLVF VPFTGVDNHK RSITFGAGLI AREDVESYEW LLKSFKAAMG YTPRCTITDQ  360
DPALKVAIPN IMPKTRHRFC MWHIMSKVGD KAGPALAKNI EFKKALNNAV WDETLSATEF  420
ELKWAKVMQD YNLVEHRWFN QLYEAHASWI PAYFQDIFMG GLLKTTSRSE SENSYFGKFT  480
NHHCSLVEFI MQYNRAIEEQ RHNQAKLNAD CEGSTPEPKT PLGMERQAAA LYTINIFYEF  540
QKEIWAGSFT CKITNKTLEA GNRKYVVHET GAKLYEVTHE EATHKTECSC NKFNRVGILC  600
KHVLAIFKDE GIEEIPAHYI VPRWTRDACA RPMYDIVLKG SPNTQGGTEL KSIANQLWNE  660
FYNCLGLANG SENEMSLMLT TMQQLNGKLK SAKQQANPST SHQSVIESIV NATAPTEIQI  720
KPPNVAKNNG SGKRLKSNKE KAMERTKKKV RTCATCDQPG HDSQNCPERK PIPDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-95	FAR1 family protein