PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019178115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 329aa MW: 37549.8 Da PI: 6.8345 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 193 | 218 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_019178115.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence |
MAVEPEKANS EDPQQTVCSF FRKPSKAKNI RKRTAIEEGE NEDGDSKDET SVVFNKKKPA 60 VADNKLHFST RPSKREITSE SDADSKRSLF QFESSREIQV QNDNKATATL ETETEFSKDA 120 RAIRERVLKQ AEEALKGKNE KTGDEKLYKG IHGYTDYKAG FRREHTISSE KAGGSHGPLR 180 ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKAKK 240 RRMEMGMVDD DESAEQSDDD EDDAIPFACF ICRQPFVDPV VTKCKHYFCE HCALKHHAKN 300 NKCFVCNQPT LGIFNTAFEI RKKMAVEGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-160 | C3H family protein |