PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178115.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 329aa    MW: 37549.8 Da    PI: 6.8345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12193218126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_019178115.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                     67789********************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MAVEPEKANS EDPQQTVCSF FRKPSKAKNI RKRTAIEEGE NEDGDSKDET SVVFNKKKPA  60
VADNKLHFST RPSKREITSE SDADSKRSLF QFESSREIQV QNDNKATATL ETETEFSKDA  120
RAIRERVLKQ AEEALKGKNE KTGDEKLYKG IHGYTDYKAG FRREHTISSE KAGGSHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKAKK  240
RRMEMGMVDD DESAEQSDDD EDDAIPFACF ICRQPFVDPV VTKCKHYFCE HCALKHHAKN  300
NKCFVCNQPT LGIFNTAFEI RKKMAVEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein