PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177894.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 495aa MW: 53933.3 Da PI: 9.0979

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019177894.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	11.2	0.0011	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_019177894.1 141 WKCDKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MMADDALSSL TSSIRGFIQD PNPNNPNPNP NPNPAKRKRN LPGNPDPDAE VIAMSPKSLM 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSKQE VVKKVYICPE KSCVHHDPSR 120 ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD 180 SFITHRAFCD ALAEESARFT SLPPPNLNFR HELLNAGLST SALQHPQFGS HVFRPPHHDL 240 MGGGFDPASQ LTLDGQKPRL PLWLDAANSD HHHLSNANGE FLVPPQAAAS TAATLPQELL 300 MWSGGGGSAS SSTAVLKEEE HKGNIISEAM NSLYYNQAEA TPPPAAHMSA TALLQKAAQM 360 GSTRSGNSAL FGNGFGLTGS TLSTLDNYNN NARNKVQHHH HQNILGNGNS STSTGLLSVN 420 DQMNNNNNNG LLLMMQNKGK QVSGLGGSEG VDGSLTRDFL GVGGSHDQNR PFLQQNELAN 480 FASASTVGLN QYGNH

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MMADDALSSL TSSIRGFIQD PNPNNPNPNP NPNPAKRKRN LPGNPDPDAE VIAMSPKSLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSKQE VVKKVYICPE KSCVHHDPSR  120
ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESARFT SLPPPNLNFR HELLNAGLST SALQHPQFGS HVFRPPHHDL  240
MGGGFDPASQ LTLDGQKPRL PLWLDAANSD HHHLSNANGE FLVPPQAAAS TAATLPQELL  300
MWSGGGGSAS SSTAVLKEEE HKGNIISEAM NSLYYNQAEA TPPPAAHMSA TALLQKAAQM  360
GSTRSGNSAL FGNGFGLTGS TLSTLDNYNN NARNKVQHHH HQNILGNGNS STSTGLLSVN  420
DQMNNNNNNG LLLMMQNKGK QVSGLGGSEG VDGSLTRDFL GVGGSHDQNR PFLQQNELAN  480
FASASTVGLN QYGNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-105	C2H2 family protein