PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177849.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 139aa    MW: 15256.9 Da    PI: 8.6984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_019177849.1 40 FSCNYCRRKFYSSQALGGHQNAH 62
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MSYEPNTTLN LSLSNNNELK QRRGSPSPAA LIPAEPPRVF SCNYCRRKFY SSQALGGHQN  60
AHKLERTLAK KSREMSLAVR PPAAGATGPS SPSFFGYAAR LGTDDDDDDG MRGMVYGSSR  120
NNENNGQEDF TQLDLSLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-22C2H2 family protein