PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177386.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 849aa    MW: 94426.3 Da    PI: 6.1053
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36.2e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_019177386.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQTPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************7655544..48************************************************..888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_019177386.1 219 KNQLLLGIRRA 229
                     9999***9986 PP
2Auxin_resp116.42.4e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  XP_019177386.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAIChTHVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPARWPNSHWRSVK 337
                     79********************************98689******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MKLSTSGMGQ QAHEGENNKC LNSELWHACA GPLVCLPIVG SRVVYFPQGH SEQVAATTNK  60
EVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD AYLPVELGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QTPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAI RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAICH THVSVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF SLRQKRPWYP GASSFQDSNN EMINGMAWLR GGGGEPGPRS LNLNSFGMFP  420
WMAQRVDPSM LQSDLNQQYQ AMLAAGLQNL GGEDLLKQQL MQFQQPVQYL QPSGSHNPLL  480
QQQQQQQQVI QQTMSSHMLP AQMRILSDGL QRQPPQQTNN QTEQQAQQHN YQEAFPITND  540
HLQHRPLSNI PSPSFAKPDL AETNSKFVSP VSPSNMQSMM GSLCPEGSGN LMNFNRTTSQ  600
SMLNEQPPQR SWMLSPKAHG QMSACSNSTS SPTYPGKDVS IQQESSGFDT RNQVIFGANV  660
DSLGLLLPTT LSSATSASVD ADADMSSVQL GASGFQNSLY DYMQDSSELM HSAGPVDPLT  720
PTSAFVKVYK SGSVGRSLDI TRFNSYHELR QELGQMYGIE GLLEDPQRSG WQLVFVDREN  780
DILLLGDDPW EAFVNNVWYI KILSPEDVQT LGKQEAESLS RNVVERMNTS GADGRDFLSG  840
LPSLGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein