PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177204.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 368aa MW: 42383 Da PI: 8.2601

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	4.9e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF r nL+ H r+H XP_019177204.1 65 YVCETCNMSFHREQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	17.6	1e-05	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk + s++k H++t+ XP_019177204.1 147 WVCEKCGKAYAVLSDYKAHLKTC 169 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MLPNHSIYLS SSSSSSSSSK LKFFSQEIRH DCTTTKRKRK PAGTPDPNAQ VIYLSPEKLM 60 ESDRYVCETC NMSFHREQNL QMHRRRHKVP WQPQKAAACS PPQEVARKRV YVCPEPSCVH 120 HDPSHALGDL VGIKKHFRRK HCDHKEWVCE KCGKAYAVLS DYKAHLKTCG TKGHSCDCGR 180 VFSRVETFIE HQDSCKPPKS FREREAPKQS AINLNLMSLE PRIFHHQYDN NNMMIINNTF 240 SHHHQKLEEL ELFPPSNSSS KPFAASTQTP MDEEEDEEEA SLEALRLKFE AEEMMKVAME 300 NKAMAEERRK EAKYLFELAN QEMAKARRIR EQVWLADLTT SHLLSDHCST SSSSSTQIRC 360 NSCSKQLQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MLPNHSIYLS SSSSSSSSSK LKFFSQEIRH DCTTTKRKRK PAGTPDPNAQ VIYLSPEKLM  60
ESDRYVCETC NMSFHREQNL QMHRRRHKVP WQPQKAAACS PPQEVARKRV YVCPEPSCVH  120
HDPSHALGDL VGIKKHFRRK HCDHKEWVCE KCGKAYAVLS DYKAHLKTCG TKGHSCDCGR  180
VFSRVETFIE HQDSCKPPKS FREREAPKQS AINLNLMSLE PRIFHHQYDN NNMMIINNTF  240
SHHHQKLEEL ELFPPSNSSS KPFAASTQTP MDEEEDEEEA SLEALRLKFE AEEMMKVAME  300
NKAMAEERRK EAKYLFELAN QEMAKARRIR EQVWLADLTT SHLLSDHCST SSSSSTQIRC  360
NSCSKQLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	6e-91	C2H2 family protein