PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177136.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 369aa    MW: 39909.8 Da    PI: 6.8417
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.6e-19289323135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_019177136.1 289 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 323
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MLYPTSHHSH FSPLSSLSLL PPPPHPPSSP LKAVMECVEL GSFLRPQAAL KMIHQQGYLE  60
NEFAAAAGNG QGGVAAISGD DLFVDQLLNL SNEFVEAEAE KEEEKVEEKR VENLSVTLVS  120
ASPQKEAETV TFPVTDDFAG SIPGSELSVP ADDLDNLEWL SHFVEASFSD EYSLTCPAGK  180
LLPLPSEENN HLSRSEIPVQ GKPGFISPVQ TKARTKRART GVRVWPVGAP PSFTESSVSS  240
SSSSSSSSTT TLSSSPTNRW FAQCNSGQLI GKPVAKKPGM QSAQQSRRCS HCGVQKTPQW  300
RAGPLGAKTL CNACGVRFKS GRLLPEYRPA CSPTFSRELH SNNHRKVLEM RRQKEAETEP  360
GLASPVQSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-63GATA family protein