PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176989.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 534aa MW: 61056.2 Da PI: 7.3823

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	102	142	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g W+ + +++g ++t c+++++ XP_019176989.1 102 WNADEEMLLLEGIEMYGIGKWAEVGEHVG-TKTKDACIEHYR 142 ***************************.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MNVFCFLFLL HRSRRKKNAS NGENLDYITA GQGSGEGKPA SYHCNYCNKD ITGRIRIKCA 60 VCSDFDLCIE CFSVGAEVQP HKSNHPYRVM DILSFPLICP DWNADEEMLL LEGIEMYGIG 120 KWAEVGEHVG TKTKDACIEH YRSAYLNSPY FPLPDMTHVV GRNREELLAM SKENGEDKKG 180 FVSLGELARK NELPYSPSRV KLEDSNRSGS SGRLTSASNT GTAGIKKPSK KVLTKDQTDS 240 VKLEDNVSAL NFGSKKPKLS KDEGPSLMEI SGYNPKRHEF DPEYDNDAEQ LLADMEFKDA 300 DTEEERELKL RVLRIYSKRL DERKRRKDFI TERNLLYPTE FEKTLSQEEK DIWRRYDAFM 360 RFHSRGEHEE LLKAIISEHR ILKRIKELKE ARAAGCRSSA EADRYFEQKR KREVEENGPK 420 KENYHVGPSS LDSLSSLGTH SNKRSSSLAN LSSLTDLEFA AHSAIELLSE PEKQLCRDIR 480 MPAPHYLKML ELMTVHIYSG DITKKSDAYT FFQIETTKVD RVYDMLLKKG IAPL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MNVFCFLFLL HRSRRKKNAS NGENLDYITA GQGSGEGKPA SYHCNYCNKD ITGRIRIKCA  60
VCSDFDLCIE CFSVGAEVQP HKSNHPYRVM DILSFPLICP DWNADEEMLL LEGIEMYGIG  120
KWAEVGEHVG TKTKDACIEH YRSAYLNSPY FPLPDMTHVV GRNREELLAM SKENGEDKKG  180
FVSLGELARK NELPYSPSRV KLEDSNRSGS SGRLTSASNT GTAGIKKPSK KVLTKDQTDS  240
VKLEDNVSAL NFGSKKPKLS KDEGPSLMEI SGYNPKRHEF DPEYDNDAEQ LLADMEFKDA  300
DTEEERELKL RVLRIYSKRL DERKRRKDFI TERNLLYPTE FEKTLSQEEK DIWRRYDAFM  360
RFHSRGEHEE LLKAIISEHR ILKRIKELKE ARAAGCRSSA EADRYFEQKR KREVEENGPK  420
KENYHVGPSS LDSLSSLGTH SNKRSSSLAN LSSLTDLEFA AHSAIELLSE PEKQLCRDIR  480
MPAPHYLKML ELMTVHIYSG DITKKSDAYT FFQIETTKVD RVYDMLLKKG IAPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	328	RKRRKD