PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176943.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 145aa    MW: 16262.7 Da    PI: 8.9507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08109130324
                     S---SGGGGTS--TTTTT-SS- CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFa 24 
                      + C +++ tG C yG+rC+F+
  XP_019176943.1 109 VADCIYYLGTGLCGYGARCRFN 130
                     689******************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MKQKEEDIAN HSLIVESSRR KKTLQQIFSR FIDRENELRQ SKPPTPQLPQ RPTMDPWTKS  60
RLSGHLCTQS PLLLSSAGVV SATETGLEEA LWQLSHSGGP KSYPERPNVA DCIYYLGTGL  120
CGYGARCRFN QGLIGLILMF TWGLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-14C3H family protein