PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176800.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25964.7 Da PI: 10.0072

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.8	4.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g++yeys+ XP_019176800.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRVYEYSN 59 79***********************************************95 PP
2	K-box	98.2	1.2e-32	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e +a+ +qqe++kL+++i++Lq+++Rhl+Ge+L+s +++eL+qLe++Le++++kiRskK++l+++++e+lqk+e l++en Lr+k++e XP_019176800.1 82 PQELNAQFYQQESKKLRQQIHMLQNSNRHLVGEGLGSSNVRELKQLESRLERGISKIRSKKHDLIIAETENLQKREVHLEQENAFLRAKIAE 173 578899***********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRVYEYSNN 60 NIKGTIDRYK KATSDASNIC TPQELNAQFY QQESKKLRQQ IHMLQNSNRH LVGEGLGSSN 120 VRELKQLESR LERGISKIRS KKHDLIIAET ENLQKREVHL EQENAFLRAK IAENERLQQL 180 SMMPGAGQEY HAIQHYLARN MLQLNVMEGV QASYPVPDKK TLHLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-100	MIKC_MADS family protein