PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176771.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 377aa MW: 40955.1 Da PI: 8.7017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.4e-06	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F r nL+ H r+H XP_019176771.1 70 YVCEFCGQGFQREQNLQMHRRRH 92 9*********************9 PP
2	zf-C2H2	15.7	4.2e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_019176771.1 150 WVCDKCSKGYAVQSDYKAHLKTC 172 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MLDNNVNATN EATPGPSSSS EAALTSPAPA PQNGVSVSIP KRKRRPAGTP DPDAEVVSLS 60 PKTLLESDRY VCEFCGQGFQ REQNLQMHRR RHKVPWKASK RGAAAAGAGK KRVYVCPEAS 120 CLHHDARHAL GDLVGIKKHY RRKHSNSKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD 180 CGRVFSRVES FIEHQDACAA KRNNGTDTQP SATSPSSDAN FSTAVPPPLT IPPPAEPPSD 240 EHYHKKHYSG LELQLLPSSP AFPPPEDDGA GLNLSIGSCS AGQKSGAVAS EEMKMAMAEK 300 SYAEETRQDA RRQTELAELE FASAKRIRLA AKAELEKAQV LKEQAAEKIS AIMLEITCRA 360 CKQKLSENGD FRPRLDG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MLDNNVNATN EATPGPSSSS EAALTSPAPA PQNGVSVSIP KRKRRPAGTP DPDAEVVSLS  60
PKTLLESDRY VCEFCGQGFQ REQNLQMHRR RHKVPWKASK RGAAAAGAGK KRVYVCPEAS  120
CLHHDARHAL GDLVGIKKHY RRKHSNSKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD  180
CGRVFSRVES FIEHQDACAA KRNNGTDTQP SATSPSSDAN FSTAVPPPLT IPPPAEPPSD  240
EHYHKKHYSG LELQLLPSSP AFPPPEDDGA GLNLSIGSCS AGQKSGAVAS EEMKMAMAEK  300
SYAEETRQDA RRQTELAELE FASAKRIRLA AKAELEKAQV LKEQAAEKIS AIMLEITCRA  360
CKQKLSENGD FRPRLDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	PKRKRRP
2	41	46	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-119	C2H2 family protein