PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176607.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 355aa MW: 38644.1 Da PI: 6.2863

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.5e-08	11	52	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +++ ++ fC+ + +lC +C +++H H + XP_019176607.1 11 KLCDSCKRASATVFCRADTAFLCLSCDSKIHAAnklasrHAR 52 68*****************************65566666655 PP
2	zf-B_box	27.8	5.3e-09	54	97	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ +e+ ++++ C+ + lC +C +H+ H++ p XP_019176607.1 54 LVCEVCEQAPASFTCKADAAALCVTCDRDIHSAnplarrHERLP 97 68*****************************6688888898877 PP
3	CCT	70.2	5.3e-24	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+a XP_019176607.1 292 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRA 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGAENWSLTA KLCDSCKRAS ATVFCRADTA FLCLSCDSKI HAANKLASRH ARVLVCEVCE 60 QAPASFTCKA DAAALCVTCD RDIHSANPLA RRHERLPVVP FYDSAVDAKH GSPSVSSGEQ 120 YFSNDSDNHP EAEEEAEAAS WLLPTPNNAK GVDLEGPEYK TADYLFGGDM DSYLDMEMIP 180 GGGDQKPHHQ NPRQHYNSDG VVPVLNKTEP THVPGPVVDG FPTYEIDFAA GSKPPFMYNF 240 ATQTISHSVS SSSMDVGVVP DQNAMADVSN PAFGRSTGTG EAVPNPLSGL DREARVLRYR 300 EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRADADVD SLLAADASYG VVPSY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGAENWSLTA KLCDSCKRAS ATVFCRADTA FLCLSCDSKI HAANKLASRH ARVLVCEVCE  60
QAPASFTCKA DAAALCVTCD RDIHSANPLA RRHERLPVVP FYDSAVDAKH GSPSVSSGEQ  120
YFSNDSDNHP EAEEEAEAAS WLLPTPNNAK GVDLEGPEYK TADYLFGGDM DSYLDMEMIP  180
GGGDQKPHHQ NPRQHYNSDG VVPVLNKTEP THVPGPVVDG FPTYEIDFAA GSKPPFMYNF  240
ATQTISHSVS SSSMDVGVVP DQNAMADVSN PAFGRSTGTG EAVPNPLSGL DREARVLRYR  300
EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRADADVD SLLAADASYG VVPSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	4e-99	CO-like family protein