PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176579.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 272aa    MW: 31107.8 Da    PI: 9.363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.2e-1546129698
                     ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +p + + ++ + +p  f++++ +g+ +   +  +  +  rsW+vk+  r+ +   +l++GW++F+ +ngL++g fvvF+ ++++ f   v+vf+
  XP_019176579.1  46 KPIHQGFKNGVDIPTAFLAKYlKGQAP---KFAILRRGDRSWRVKI--RGDR---MLGNGWEKFAAENGLNVGYFVVFRQERDTVF--DVSVFE 129
                     4456666677***********755544...5888899*********..7776...8***********************5555555..888776 PP
2B353.15.9e-17174259492
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ++++++ l++ +l+lp +fa+++g++ ee+++++l+d + rsW v l   + ++++ l +GW  F  angLkegD   F+l++ s++++
  XP_019176579.1 174 ATIQPYCLRKPNLYLPLEFARSNGLVGEEKREMILRDDKERSWPVVL--GRMGRHVALMRGWLAFQMANGLKEGDEYKFELIE-SGKKP 259
                     567899999999***********9999999*****************..999999*************************998.55555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MNCSPPTHAY LSVLSPHHHS HFCLPSLFYR ITAMKTIPPK NPHFFKPIHQ GFKNGVDIPT  60
AFLAKYLKGQ APKFAILRRG DRSWRVKIRG DRMLGNGWEK FAAENGLNVG YFVVFRQERD  120
TVFDVSVFEP SLCERDYCPL PHAACPLPQP SNNFRSYVPA TTSSLSAENP HFVATIQPYC  180
LRKPNLYLPL EFARSNGLVG EEKREMILRD DKERSWPVVL GRMGRHVALM RGWLAFQMAN  240
GLKEGDEYKF ELIESGKKPI AKFHCHFSGE ED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-39B3 family protein