PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176567.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 344aa    MW: 39238.2 Da    PI: 10.1474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-1420961398
                    TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++ + +p  f++++ +g+     +  +  +  r+W+vk+  r+++   +l++GW++F+ +ng  +gDfvvF+ ++++ f   v+vf+
  XP_019176567.1 20 KNGVNIPTAFLAKYlKGQD---PKFAILRRGDRRWRVKI--RGGR---MLADGWEKFAAENGFVVGDFVVFRQERDTVF--DVSVFE 96
                    45599*********74443...368888999********..7776...8***********************5555555..887776 PP
2B359.94.5e-19138223391
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +++++ lk ++l+lp +fa+++g++ +e+++++l+d + rsW+v l  r+ + ++ + kGW+ F  angLkegD   F+l+++ +++
  XP_019176567.1 138 VSTIKPYCLKAQQLYLPMEFARSNGLVAKEKREMILRDDKERSWSVVL--RRDGYHFGILKGWQAFRVANGLKEGDAYKFELIKT-GKT 223
                     55679999****************************************..9999889999*********************9984.443 PP
3B360.43e-19246331492
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ++++++ l++++l+lp +fa+++g++ ee+++++l+d + rsW+v l   +++ ++ l +GW+ F  a+gLkegD   F+l++ s++++
  XP_019176567.1 246 ATIQPYCLRRSNLYLPLEFARSNGLVGEEKREMILRDDKERSWTVVL--GRTGHHVALMGGWRAFQMAKGLKEGDAYKFELIK-SGKKP 331
                     5679999****************9999999*****************..999999**************************98.55555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MKTIPPQNPH FFKPIFKGFK NGVNIPTAFL AKYLKGQDPK FAILRRGDRR WRVKIRGGRM  60
LADGWEKFAA ENGFVVGDFV VFRQERDTVF DVSVFEPSLC ERDFPLPVPQ PSNNFCSAVE  120
PIARDTTSTS PADHPYFVST IKPYCLKAQQ LYLPMEFARS NGLVAKEKRE MILRDDKERS  180
WSVVLRRDGY HFGILKGWQA FRVANGLKEG DAYKFELIKT GKTPIAKLHL LGTTSSSSAE  240
NPHFVATIQP YCLRRSNLYL PLEFARSNGL VGEEKREMIL RDDKERSWTV VLGRTGHHVA  300
LMGGWRAFQM AKGLKEGDAY KFELIKSGKK PIAKFHCHFS GEED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-61B3 family protein