PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176516.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 624aa    MW: 68329.6 Da    PI: 6.3045
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.7e-28205258155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  XP_019176516.1 205 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 258
                     79*******************.********************************8 PP
2Myb_DNA-binding40.37.1e-13207257148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qk++
   XP_019176516.1 207 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 257
                      678**********************************************97 PP
3Response_reg80.27.1e-27161241109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ l +++l+q+l+k +y +v+ ++++++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a g  +++ + ++ G
  XP_019176516.1  16 VLVVDDDLLCLRILEQMLRKCKY-NVTICSQATAALNLLRERRgcYDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTNLVMKGIRHG 108
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  XP_019176516.1 109 ACDYLIKPIRDEELKN 124
                     *************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    
MAAAVVPEQF PVGLRVLVVD DDLLCLRILE QMLRKCKYNV TICSQATAAL NLLRERRGCY  60
DIVISDVHMP DMDGFKLLEH VGLEMDLPVI MMSADGRTNL VMKGIRHGAC DYLIKPIRDE  120
ELKNIWQHVV RKKCNLSKEN DHSGSFEDND QPKQGGDDAE YASSVIEGAD GVLKTVTKKR  180
DFKDDDDDDD DDDEIENDDP ATAKKPRVVW SVELHQQFVS AVNQLGIDKA VPKRILELMN  240
VPGLTRENVA SHLQKFRLYL KRLSGVAQQQ GGLPNSFCGP IEPNPNLGSL GRYEIQALAA  300
SCQIAPQTLA AIHAEFLGRP TSGLVLPTID HPALLQASLP GTKYILDDQA VAYGQPLMKC  360
PPNISKQFTQ HLSTEDIPLG VGAWPPKNVC VVPSVNLSGL GAQNGNMLTT MMQHHQQQQK  420
QQQMEQHQKL STIPESCRPV NVRPSCLVVP SLSSANFQVT NSPASISQTS SFSKSNVMDS  480
RILSPQSGSL SPSVSSCSTI ADNSASWQVQ NSACIIGASR HVAGVVPNIT GIPVPDNHKS  540
NQLLDQGPIR NLGFASRGSS IPSRFAIDES ESPPISNIYH SRIYKESNTC KVKQEPDVNI  600
ADNAKVSVQM LQRIPPNDFT SVFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-108ARR-B family protein