PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175909.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92697.1 Da    PI: 6.278
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-192078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019175909.1 20 KYVRYTPEQIEALERLYHECPKPSSLRRQQLIRECsilsNIEPKQIKVWFQNRRCREKQ 78
                    5679*****************************************************97 PP
2START178.34.6e-561653732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++l++ s+g  g+++l 
  XP_019175909.1 165 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCVGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNAMSTGngGTVELL 258
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  +++g++vi+++S++++q+ p+    +++vRae+ pSg+li+p+++g+s +++v+hvdl+ ++++++lr+l+
  XP_019175909.1 259 YMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVICERSLNNTQNGPSmppVQHFVRAEMMPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLY 353
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++   ++t++a+l+++++
  XP_019175909.1 354 ESSTLLSQRTTLAALRHLRQ 373
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MMAVTSSCKE SGKMGLDNGK YVRYTPEQIE ALERLYHECP KPSSLRRQQL IRECSILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF  120
RQHTQNAALT TTDNSCESVV TSGQNNLTPQ RPPPRDASPA GLLSLAEETL TEFLSKATGT  180
AVEWVQMPGM KPGPDSIGII AISHGCVGVA SRACGLVGLE PTRVAEILKD RPSWFRDCRA  240
VDVLNAMSTG NGGTVELLYM QLYAPTTLAP ARDFWLLRYT SVMEDGSLVI CERSLNNTQN  300
GPSMPPVQHF VRAEMMPSGY LIRPCEGGGS IIHIVDHVDL EPWSVPEVLR PLYESSTLLS  360
QRTTLAALRH LRQISQEISQ PTVTGWGRRP AALRALSQRL SKGFNEAVNG FTDEGWSMIE  420
SDGIDDVTIM VNSSTAKLMG ANLPYANGLP PMSGAVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADSSID AYSAAAVKAG PCSLPVARTG NFGGQVILPL AQTIEHEEFM EVVRLENMGH  540
FREDMLTAGD IFLLQLCSGV DENAVGTCAE LISAPIDASF ADDAPLLPSG FRIIPLDSRM  600
DASSPNRTLD LASTLEVGTG GTRQTGDQSK QCSTSKSVMT IAFQFAFEIH LQESIAAMAR  660
QYVRSIISSV QRVALALSPS QLSPHAGLRP PPGTPEAHTL ARWICQSYRF FLGMDLLKSA  720
SEGGESILKS LWHHSDALMC CSLKALPVFS FANEAGLDML ETTLVALQDI TLEKVFDDNG  780
RKTLFSELPQ IMQQGFTCLQ GGICLSSMGR PVSYERAVAW KVLNEEENPH SICFMFINWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein