PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019175738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40189.2 Da PI: 6.4152 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.8e-07 | 137 | 158 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C+ Gd C FaHg XP_019175738.1 137 AACPDFRK-GNCRKGDLCEFAHG 158 78******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MMIGERNLPN PTVLVPPWLS DDPTANIHFV SSPGGNANFS DDVSQFLQND AVLQALQRYL 60 PSNDAAAAVM MGEFESDNDK DVEFPVDAYA CDNFRMYDFK VRKCARGRSH DWTECPFAHP 120 GEKARRRDPR KYRYSGAACP DFRKGNCRKG DLCEFAHGVF ECWLHPARYR TQPCKDGVNC 180 KRRVCFFAHS PEQLRVLSPR ADGYGFSDAS CAKTLHFVPS SSPESGSPPS ESPPMSPMNS 240 MVASLRQLQL NKVKSMPASS WSVHMLGSPR LTRSAGFCSL PTTPTRSLSR PGVCNFDLCE 300 EEEEEEVPME RVESGRDLRA KMLEKLSKEN PLDAVEAGSN PTHNPSYAPS PDLGWVSDLI 360 Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-108 | C3H family protein |