PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175671.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 826aa MW: 90748.3 Da PI: 4.4552

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	319	339	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G+C G++C+F H+ XP_019175671.1 319 ICDFFAK-GWCIKGSSCRFLHV 339 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MSSAAAAVDP PHNTVDPASK SEQEMEDEEY EYEYEEIEEE IEEEIEVEEE EEVEEVEEEE 60 EEGEKEDVEE AGADSDQELA PSNGEDSGKG TAEAGIAEAA AKLFNEHDHK KQDLEEEVAR 120 KEGADNAEEL TKLNEEDHAE EVEETAAAEI AEGLSQCNKE GHEKENRQVL EPARLEKLLG 180 SDSATPQESV AHPPLDASVV RDSDNNNGTA SPDDTNEGKK STVDGNKTHR GDVNISLHEG 240 GVMPEKAFGC EINAAMLDVD PSSNGIIGVQ YSKDMADQEA AQAVEDMEIS PRSDVPQLRP 300 RSLSPGAEFN DKNKRPAIIC DFFAKGWCIK GSSCRFLHVR DNAANSSKEG SVDASKLKGI 360 LAGEGLKYTT EISAKNMHSD LGLSRIEHEA TLRLKSGIEE VPLDKNLSVS DTSLKDKDIG 420 REYLEHKPYL ANYNHSSSML KDYSQTFGNN SFGRGLPSEN CRNVGYSSYF SHLEGIRSKG 480 SQFLHDDHPS NCPVERVPLY PSASWNASPL GLQKPIEGGK ELSASGSVSF KHKSPPFTGS 540 ESTLISHLDL SAPTHHSSLY KPNLSFDNWE PSVPFQPSFL ITQRMLSEAS RYDPIRDSIE 600 QTIAQDKPSQ FPFSGQGASA SGTHVCENAD PVATGNLGPE QSSNKHSVSS HSSHKDAVPR 660 NLSEKEKELM DTAGAHQENI YYTSLKEKQL PKSADFGDTT EADKTHCSND TVQKNGAQYK 720 MELKVESVKS GNDVDGLVHQ DSRALKQFES AVVEFIKELL KPTWREGLLS RDAYKAIVKK 780 TKANFLSTMQ PEQIPDNSDS VKEYLSFAQP KLEKLVLGYV DKYGRS

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MSSAAAAVDP PHNTVDPASK SEQEMEDEEY EYEYEEIEEE IEEEIEVEEE EEVEEVEEEE  60
EEGEKEDVEE AGADSDQELA PSNGEDSGKG TAEAGIAEAA AKLFNEHDHK KQDLEEEVAR  120
KEGADNAEEL TKLNEEDHAE EVEETAAAEI AEGLSQCNKE GHEKENRQVL EPARLEKLLG  180
SDSATPQESV AHPPLDASVV RDSDNNNGTA SPDDTNEGKK STVDGNKTHR GDVNISLHEG  240
GVMPEKAFGC EINAAMLDVD PSSNGIIGVQ YSKDMADQEA AQAVEDMEIS PRSDVPQLRP  300
RSLSPGAEFN DKNKRPAIIC DFFAKGWCIK GSSCRFLHVR DNAANSSKEG SVDASKLKGI  360
LAGEGLKYTT EISAKNMHSD LGLSRIEHEA TLRLKSGIEE VPLDKNLSVS DTSLKDKDIG  420
REYLEHKPYL ANYNHSSSML KDYSQTFGNN SFGRGLPSEN CRNVGYSSYF SHLEGIRSKG  480
SQFLHDDHPS NCPVERVPLY PSASWNASPL GLQKPIEGGK ELSASGSVSF KHKSPPFTGS  540
ESTLISHLDL SAPTHHSSLY KPNLSFDNWE PSVPFQPSFL ITQRMLSEAS RYDPIRDSIE  600
QTIAQDKPSQ FPFSGQGASA SGTHVCENAD PVATGNLGPE QSSNKHSVSS HSSHKDAVPR  660
NLSEKEKELM DTAGAHQENI YYTSLKEKQL PKSADFGDTT EADKTHCSND TVQKNGAQYK  720
MELKVESVKS GNDVDGLVHQ DSRALKQFES AVVEFIKELL KPTWREGLLS RDAYKAIVKK  780
TKANFLSTMQ PEQIPDNSDS VKEYLSFAQP KLEKLVLGYV DKYGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-39	C3H family protein