PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175537.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 383aa MW: 44676.7 Da PI: 10.0242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.1	1.6e-09	53	95	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ +r+r+++rtgC+a+++ k + ++vt++ ++HnH+++ XP_019175537.1 53 PSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIEKHNHSMS 95 4578899*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MLPKSGLTRG LVPSLQHVTG PKLKSKSFAT EKDLRIQELN ILTRSQVQMQ EGPSRPKRRR 60 VSNRTGCRAR IMFKYIGAAG YQVTTFIEKH NHSMSSVLAR QFLKEIETSP VFTRSLYSTA 120 LKQILEHQNQ TVYTKQEMCP AFAFDYEVDE DEQMSRLFWA DPMSKRILLH LEMLYDMAMG 180 MEPRIIVTDQ DPAMKVAIPT VFKQARHRYC MWHIMCKVGE KVGPTLNKNE EFRNKLNLIV 240 WTSSLEPPDF EKQWRELMEK YNLVEHNWFK TMFEARKHWI PAYFRDGFMG GLLRTTSRSE 300 SENYTYSRFT GPQSSLVEFM MNFDSALKLQ RNTNAKLNSD NEGYNPDMKT PLGLKSTLQS 360 STPLLFSIKF RKKYVPPVAN VWC

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MLPKSGLTRG LVPSLQHVTG PKLKSKSFAT EKDLRIQELN ILTRSQVQMQ EGPSRPKRRR  60
VSNRTGCRAR IMFKYIGAAG YQVTTFIEKH NHSMSSVLAR QFLKEIETSP VFTRSLYSTA  120
LKQILEHQNQ TVYTKQEMCP AFAFDYEVDE DEQMSRLFWA DPMSKRILLH LEMLYDMAMG  180
MEPRIIVTDQ DPAMKVAIPT VFKQARHRYC MWHIMCKVGE KVGPTLNKNE EFRNKLNLIV  240
WTSSLEPPDF EKQWRELMEK YNLVEHNWFK TMFEARKHWI PAYFRDGFMG GLLRTTSRSE  300
SENYTYSRFT GPQSSLVEFM MNFDSALKLQ RNTNAKLNSD NEGYNPDMKT PLGLKSTLQS  360
STPLLFSIKF RKKYVPPVAN VWC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	61	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-27	FAR1 family protein