PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175499.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 902aa MW: 100356 Da PI: 8.4091

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.8e-19	810	890	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e++++++ k +++lW+e+s+++ + g++rsp qCk+ w +l ++y++ k+ +k+ ++++pyf++++ XP_019175499.1 810 KWKPEEVKKLIKMRGELNSKFQVLKGRMALWQEISSNLLSDGISRSPGQCKSLWASLVQKYEESKKDRKS-----QEKWPYFKDMN 890 7**************************************************************99998.....478****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK 60 SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE 120 LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK 180 KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW 240 KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG 300 RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED 360 IDSYAPKDLL IVTTGSQVSN IDAFYAFANC ILVYLNLLLC QAEPRAALNL ASYGSSHSLK 420 LSKDDLILYS AKVIPGNETR VMKMLNRISE IGSTVIMGKN ELLHTSGHAH REELEEVLRI 480 VKPQHFLPIH GELLFLKEHE LLGRSTGIRH STVIKNGEML GVSHLRNRRV LSNGFISLGK 540 ENLQLMYSDG DKAFGTAAEL CVDERMRIAS DGIIVISMEI LRPQPTDTLS EKAIKGKIRI 600 TTRCLWLDKG KLLDALHKAA HAALSSCPVN CPLHHMERTV SEVLRKLVRK YSSKRPEVIA 660 IATENPVSVL ADEISGKLSG KSHVGSGISV LRKAINGDQE KRWSNTIQAE EENNGPEHLM 720 NIAYEEEKDT SDEETTSSSL LQDCSNNDLP SDDFWKPFVT SSTIHPSEEN GDGALLQEQL 780 HDSSVKGNNK LFSDLSKSKL KSSKSMTRNK WKPEEVKKLI KMRGELNSKF QVLKGRMALW 840 QEISSNLLSD GISRSPGQCK SLWASLVQKY EESKKDRKSQ EKWPYFKDMN SILSDLEAPT 900 SK

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK  60
SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE  120
LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK  180
KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW  240
KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG  300
RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED  360
IDSYAPKDLL IVTTGSQVSN IDAFYAFANC ILVYLNLLLC QAEPRAALNL ASYGSSHSLK  420
LSKDDLILYS AKVIPGNETR VMKMLNRISE IGSTVIMGKN ELLHTSGHAH REELEEVLRI  480
VKPQHFLPIH GELLFLKEHE LLGRSTGIRH STVIKNGEML GVSHLRNRRV LSNGFISLGK  540
ENLQLMYSDG DKAFGTAAEL CVDERMRIAS DGIIVISMEI LRPQPTDTLS EKAIKGKIRI  600
TTRCLWLDKG KLLDALHKAA HAALSSCPVN CPLHHMERTV SEVLRKLVRK YSSKRPEVIA  660
IATENPVSVL ADEISGKLSG KSHVGSGISV LRKAINGDQE KRWSNTIQAE EENNGPEHLM  720
NIAYEEEKDT SDEETTSSSL LQDCSNNDLP SDDFWKPFVT SSTIHPSEEN GDGALLQEQL  780
HDSSVKGNNK LFSDLSKSKL KSSKSMTRNK WKPEEVKKLI KMRGELNSKF QVLKGRMALW  840
QEISSNLLSD GISRSPGQCK SLWASLVQKY EESKKDRKSQ EKWPYFKDMN SILSDLEAPT  900
SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein