PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019175389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18658.4 Da PI: 9.9054 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrngi+KKA+E+SvLCda+v++i+++s+gk++ y+s XP_019175389.1 9 KRIENSSNRQVTFSKRRNGIIKKAKEISVLCDAKVSLIVYASSGKMHHYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.3 | 2.2e-27 | 71 | 153 | 1 | 83 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 yqk+sgk+l++ak+e+l++e++++kke++++ e+Rhl+Ged++sL++k+L+ Le++Le++l++iR+k+ e+++++ e++qk XP_019175389.1 71 YQKASGKKLWDAKHENLNNEIDRMKKENDSMHIELRHLKGEDINSLNYKDLRVLEDALESGLTSIRNKQFEIVKMMREQQQKE 153 899********************************************************************999888887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MGRGKIEIKR IENSSNRQVT FSKRRNGIIK KAKEISVLCD AKVSLIVYAS SGKMHHYCSP 60 STELVNMLDG YQKASGKKLW DAKHENLNNE IDRMKKENDS MHIELRHLKG EDINSLNYKD 120 LRVLEDALES GLTSIRNKQF EIVKMMREQQ QKEMGADRNG GY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 6e-75 | MIKC_MADS family protein |