PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175165.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 573aa    MW: 63591.8 Da    PI: 5.0337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.12.3e-1362045732374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA a+++g+le+a+a+++ l++++s +g+p  R+aay++eALaar+  s+++lykal++++ +   s ++l+a+++++ev+P+++f+++
  XP_019175165.1 204 KQLLFSCAAAIQHGNLEQASAMINGLRQMVSIQGEPCDRIAAYMVEALAARMDTSGKGLYKALKCKAPP---SNDRLSAMQVLFEVCPCFRFGFM 295
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aIlea+ ge+ vHiiDfdi+qG Q+ +Llq+La+ p++pp+lR+Tg+++pes+   +  l+ +g rL+++Ae+l++pfef++ +  + + +
  XP_019175165.1 296 AANGAILEALTGEKNVHIIDFDINQGSQYYTLLQTLATMPGKPPHLRLTGIDDPESVqrPTGGLRLIGLRLEELAENLKLPFEFRA-MPAQSALV 389
                     *******************************************************99889999***********************.79999*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      +  L ++pgE+++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpr+s+er++
  XP_019175165.1 390 APTVLGCQPGETVIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDVNTNTAPFLPRFAEAYNYYSAVFESLDATLPRDSQERMN 484
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+i n++aceg+er+er e ++kWr+r+++aGF+p p+s +++++++ l+++++++ y+v+e+ gsl +gW+d+ L+++SaWr
  XP_019175165.1 485 VERHCLARDIINIIACEGEERIERYEVAGKWRARMMMAGFNPCPISRNVNDSIRKLIKQYSER-YKVKEDAGSLHFGWEDKILIVASAWR 573
                     *************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MPLVRSSTPF GNRKLYLLNG HGDNSTGLST TMFNPEKREI AYAAAESYSS GSYDANYFID  60
SPSPSPSSEL VHPSASEALV NSFQHRPPPC PVSSGENSLS SIQSLRKCDT YQINYDSEYI  120
SGQSPDPLGL EEGNVRLKIQ ELERALLDDN DDDDMMFGCA QSMEVDPICS LFQNESSSSE  180
SNVSTSSSSN KVEDDTHNTH HTPKQLLFSC AAAIQHGNLE QASAMINGLR QMVSIQGEPC  240
DRIAAYMVEA LAARMDTSGK GLYKALKCKA PPSNDRLSAM QVLFEVCPCF RFGFMAANGA  300
ILEALTGEKN VHIIDFDINQ GSQYYTLLQT LATMPGKPPH LRLTGIDDPE SVQRPTGGLR  360
LIGLRLEELA ENLKLPFEFR AMPAQSALVA PTVLGCQPGE TVIVNFAFQL HHMPDESVST  420
VNQRDQLLRM VKSLNPKLVT VVEQDVNTNT APFLPRFAEA YNYYSAVFES LDATLPRDSQ  480
ERMNVERHCL ARDIINIIAC EGEERIERYE VAGKWRARMM MAGFNPCPIS RNVNDSIRKL  540
IKQYSERYKV KEDAGSLHFG WEDKILIVAS AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein