PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175063.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25640.1 Da PI: 9.3431

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.4	8.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstgkly+y+s XP_019175063.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELGILCDAEVGVIIFSSTGKLYDYAS 59 8***********************************************86 PP
2	K-box	88.1	1.7e-29	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ + +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R++K+++ll++i+el +k +++en +L +k+ XP_019175063.1 81 NQTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELTGLSVKDLQSLENQLEMSLRGVRTRKDQILLDEIHELNQKGSLIHQENLELYNKV 170 678899*******************************************************************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELGILCD AEVGVIIFSS TGKLYDYASS 60 SMRSVIDRYK KVKEEDYQLA NQTSEVKFWQ REAAMLRQQL QNLQENHRQM MGEELTGLSV 120 KDLQSLENQL EMSLRGVRTR KDQILLDEIH ELNQKGSLIH QENLELYNKV YGSRGKNGIS 180 RNAILTNGLS INEDPHVPVN LQLCQPQQQN SENTSGATEL GLQLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	5e-95	MIKC_MADS family protein