PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 473aa    MW: 49747.8 Da    PI: 8.0188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-125276327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG+C yGdrC+F+H++
  XP_019175056.1 52 EADCIYYLRTGFCGYGDRCRFNHPR 76
                    689********************96 PP

2zf-CCCH37.15.3e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_019175056.1  98 QPVCQYYMRTGMCKFGASCKYHHPR 122
                     689********************96 PP

3zf-CCCH34.24.2e-11143168227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG+Ck+G +CkF+H++
  XP_019175056.1 143 GEKECSYYVKTGQCKFGITCKFHHPQ 168
                     7899********************97 PP

4zf-CCCH37.92.9e-12313339127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G++C+++H+p
  XP_019175056.1 313 PGEPECQHYMKTGDCKFGSSCRYHHPP 339
                     5799*********************97 PP

5zf-CCCH31.53e-10361385327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C++++ +G C++G++CkF H++
  XP_019175056.1 361 APICSHYSVNGVCNFGPSCKFDHPM 385
                     589********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR  60
TGFCGYGDRC RFNHPRDRSL TVGAMRSSGA EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAP VALNIYGCPL RPGEKECSYY VKTGQCKFGI TCKFHHPQPA GIQVPAPNPG  180
PGPLPAPTAV PPPAIYPIMQ SPVQSSQQYG IMPGNWSVPR PVLFPGSYIP GTYSPMLLPP  240
GLVPVPGSWT PYPAPLSPVA SPNTQTTSGA GSVYGFTQLS SSAPAYSGTY VSVASSVTPS  300
AGSQKEHAYP QRPGEPECQH YMKTGDCKFG SSCRYHHPPD WSGPKTNLLL GPMGLPLRPG  360
APICSHYSVN GVCNFGPSCK FDHPMGTISY SPSASSLADI PTAPYPVGSA IGNLALPSSG  420
LRPDLISGSN TRTYSKTGPP AHSGTQQSGQ QSFSSSGGSS TGHGHGGEVS TSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-134C3H family protein