PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019175056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 49747.8 Da PI: 8.0188 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.5e-12 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yGdrC+F+H++ XP_019175056.1 52 EADCIYYLRTGFCGYGDRCRFNHPR 76 689********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.3e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_019175056.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP | |||||||
3 | zf-CCCH | 34.2 | 4.2e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ XP_019175056.1 143 GEKECSYYVKTGQCKFGITCKFHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 2.9e-12 | 313 | 339 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_019175056.1 313 PGEPECQHYMKTGDCKFGSSCRYHHPP 339 5799*********************97 PP | |||||||
5 | zf-CCCH | 31.5 | 3e-10 | 361 | 385 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++ +G C++G++CkF H++ XP_019175056.1 361 APICSHYSVNGVCNFGPSCKFDHPM 385 589********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence |
MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR 60 TGFCGYGDRC RFNHPRDRSL TVGAMRSSGA EYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSPAP VALNIYGCPL RPGEKECSYY VKTGQCKFGI TCKFHHPQPA GIQVPAPNPG 180 PGPLPAPTAV PPPAIYPIMQ SPVQSSQQYG IMPGNWSVPR PVLFPGSYIP GTYSPMLLPP 240 GLVPVPGSWT PYPAPLSPVA SPNTQTTSGA GSVYGFTQLS SSAPAYSGTY VSVASSVTPS 300 AGSQKEHAYP QRPGEPECQH YMKTGDCKFG SSCRYHHPPD WSGPKTNLLL GPMGLPLRPG 360 APICSHYSVN GVCNFGPSCK FDHPMGTISY SPSASSLADI PTAPYPVGSA IGNLALPSSG 420 LRPDLISGSN TRTYSKTGPP AHSGTQQSGQ QSFSSSGGSS TGHGHGGEVS TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-134 | C3H family protein |