PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175023.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 516aa    MW: 58157 Da    PI: 8.3948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-1526117199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     ffkv+  ++ ++++ l+lp   +e+ +g+k   kt tl +e+gr W+v +   +++g+ +++kGW+ Fv+ +gL++g+f vF+++g   +f  +v
  XP_019175023.1  26 FFKVM--ASGFQTK-LTLPPIVCEKLEGDKVL-KTATLITEKGR-WDVGI-GHGSQGKLYFEKGWEVFVQNHGLRVGEFAVFEYIGGgICF--NV 112
                     88988..7777777.***********999887.69****99885.*****.4555555***************************876777..88 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++++k
  XP_019175023.1 113 SLLDK 117
                     77776 PP
2B343.27.1e-14412501390
                     EE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   3 kvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     ++l+++++l+s    + +p +f+ ++++   ++  +tl+ +s  r+ ++k++  ++ +  ++t+GW eF   n+L+egD+++Fkl ++ s+f
  XP_019175023.1 412 STLMKPYHLRSrsPYMHIPAEFCVANELY--QNARITLKGPSDeRQVSLKVCKGGRTKYAIITRGWPEFIAGNNLEEGDTCIFKLLRKrSSF 501
                     56677777776445689*********888..5567*****666599*****5555555599***********************88654666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    
MKHGTPLLLP PPPPGMEAKL QVGWRFFKVM ASGFQTKLTL PPIVCEKLEG DKVLKTATLI  60
TEKGRWDVGI GHGSQGKLYF EKGWEVFVQN HGLRVGEFAV FEYIGGGICF NVSLLDKSGS  120
EKVFSQSEEE QNMASKLNPL TQISQDETLP PLSIEIANID EKEGEDVAIK MEEDEDMITY  180
HLNARLAPLY AILAEIDNED LPSRTNIHEE RGHSRVNKRN ADQERNKENS IVALPAEIDR  240
EKACPSEVKI QEQHAIKVPV KSEVADEVPL QIELGNPGKG KRSVKRKRDD KTVPSQVKIQ  300
KRDINRCSTK QNRDDDKTPS QTKAQKHDMN KCSVKQETDD DNAPSPAITQ KHEKNKSPVK  360
NDKNKSSLEQ ENHKDQVPSK PKGCAQDKKG DTKRKRERKV NTSSPEQCLQ FSTLMKPYHL  420
RSRSPYMHIP AEFCVANELY QNARITLKGP SDERQVSLKV CKGGRTKYAI ITRGWPEFIA  480
GNNLEEGDTC IFKLLRKRSS FDDAVVLEVE VLRAST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-11B3 family protein