PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175022.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 519aa MW: 58688.3 Da PI: 8.2548

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.1	2.2e-15	11	102	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ffkv+ ++ ++++ l+lp +e+ +g+k kt tl +e+gr W+v + +++g+ +++kGW+ Fv+ +gL++g+f vF+++g +f +v XP_019175022.1 11 FFKVM--ASGFQTK-LTLPPIVCEKLEGDKVL-KTATLITEKGR-WDVGI-GHGSQGKLYFEKGWEVFVQNHGLRVGEFAVFEYIGGgICF--NV 97 88988..7777777.*********999887.6999885.*.4555555*************************876777..88 PP EEE-S CS B3 95 kvfrk 99 ++++k XP_019175022.1 98 SLLDK 102 77776 PP
2	B3	43.2	7.2e-14	415	504	3	90
EE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 3 kvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++l+++++l+s + +p +f+ ++++ ++ +tl+ +s r+ ++k++ ++ + ++t+GW eF n+L+egD+++Fkl ++ s+f XP_019175022.1 415 STLMKPYHLRSrsPYMHIPAEFCVANELY--QNARITLKGPSDeRQVSLKVCKGGRTKYAIITRGWPEFIAGNNLEEGDTCIFKLLRKrSSF 504 56677777776445689*******888..5567*666599*5555555599*********************88654666 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MEAKLQVGWR FFKVMASGFQ TKLTLPPIVC EKLEGDKVLK TATLITEKGR WDVGIGHGSQ 60 GKLYFEKGWE VFVQNHGLRV GEFAVFEYIG GGICFNVSLL DKSGSEKVFS QSEEEQNMAS 120 KLNPLTQISQ DETLPPLSIE IANIDEKEGE DVAIKMEEDE DMITYHLNAR LAPLYAILAE 180 IDNEDLPSRT NIHEERGHSR VNKRNADQER NKENSIVALP AEIDREKACP SEVKIQEQHA 240 IKVPVKSEVA DEVPLQIELG NPGKGKRSVK RKRDDKTVPS QVKIQKRDIN RCSTKQNRDD 300 DKTPSQAKSQ KHDLNRDDDK TPSQTKAQKH DMNKCSVKQE TDDDNAPSPA ITQKHEKNKS 360 PVKNDKNKSS LEQENHKDQV PSKPKGCAQD KKGDTKRKRE RKVNTSSPEQ CLQFSTLMKP 420 YHLRSRSPYM HIPAEFCVAN ELYQNARITL KGPSDERQVS LKVCKGGRTK YAIITRGWPE 480 FIAGNNLEEG DTCIFKLLRK RSSFDDAVVL EVEVLRAST

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MEAKLQVGWR FFKVMASGFQ TKLTLPPIVC EKLEGDKVLK TATLITEKGR WDVGIGHGSQ  60
GKLYFEKGWE VFVQNHGLRV GEFAVFEYIG GGICFNVSLL DKSGSEKVFS QSEEEQNMAS  120
KLNPLTQISQ DETLPPLSIE IANIDEKEGE DVAIKMEEDE DMITYHLNAR LAPLYAILAE  180
IDNEDLPSRT NIHEERGHSR VNKRNADQER NKENSIVALP AEIDREKACP SEVKIQEQHA  240
IKVPVKSEVA DEVPLQIELG NPGKGKRSVK RKRDDKTVPS QVKIQKRDIN RCSTKQNRDD  300
DKTPSQAKSQ KHDLNRDDDK TPSQTKAQKH DMNKCSVKQE TDDDNAPSPA ITQKHEKNKS  360
PVKNDKNKSS LEQENHKDQV PSKPKGCAQD KKGDTKRKRE RKVNTSSPEQ CLQFSTLMKP  420
YHLRSRSPYM HIPAEFCVAN ELYQNARITL KGPSDERQVS LKVCKGGRTK YAIITRGWPE  480
FIAGNNLEEG DTCIFKLLRK RSSFDDAVVL EVEVLRAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-10	B3 family protein