PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175006.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 366aa    MW: 39237.4 Da    PI: 5.9946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20186235255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  XP_019175006.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYQLRG 235
                     59******9.**********965...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MAASMWSSST GVDEAFNGGG ELMEALEPFM IKTASPLLPP PPPPSSSSLF PSETSSFYPS  60
SFSFSSPSVS YPCGYDYSGF GSSAPAITSS DGCSTADTHM FSSQGGSGFG FEQPGCIGLN  120
QLTATQMNQI QAHMNLPAGH GLSSGPFQAQ WAQQQSHHQA QTVSFLGPRG VPMKQSASAA  180
PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YQLRGDLARL  240
NFPHLRHNGS LIGGDFGEYK PLHSSVDAKL QAICKNMAQG KSIDSKKSKG SSSSSSKQPK  300
VKEEEAEEKS KAVELGSDSS GSGGASDESS PVSDLTFPDF TGEESTWDMC SDLHKFPSYE  360
IDWDSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-62ERF family protein